1MMC | pdb_00001mmc

1H NMR STUDY OF THE SOLUTION STRUCTURE OF AC-AMP2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1mmca_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Plant lectins/antimicrobial peptides	Antimicrobial peptide 2, AC-AMP2	Antimicrobial peptide 2, AC-AMP2	(Amaranthus caudatus ) [TaxId: 3567 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Antimicrobial peptide 2, AC-AMP2	8025714	4003047	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Plant lectins/antimicrobial peptides	8038093	3000195	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Chitin_bind_1	e1mmcA1	A: few secondary structure elements	X: omega toxin-like	H: omega toxin-related	T: Plant lectins/antimicrobial peptides	F: Chitin_bind_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00187	Chitin recognition protein (Chitin_bind_1)	Chitin recognition protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ANTIMICROBIAL PEPTIDE 2	chitin binding binding carbohydrate derivative binding	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus defense response to fungus response to fungus cellular process disruption of cell in another organism defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus defense response to fungus response to fungus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001002	Chitin-binding, type 1	Domain
A	IPR018371	Chitin-binding, type 1, conserved site	Conserved Site
A	IPR036861	Endochitinase-like superfamily	Homologous Superfamily
A	IPR013006	Antimicrobial peptide, C6 type, conserved site	Conserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Plant lectins/antimicrobial peptides	Chitin recognition protein

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.