1MFB | pdb_00001mfb

HIGH RESOLUTION STRUCTURES OF ANTIBODY FAB FRAGMENT COMPLEXED WITH CELL-SURFACE OLIGOSACCHARIDE OF PATHOGENIC SALMONELLA

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth H]d1mfbh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth H]d1mfbh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d1mfbl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain lambda variable domain, VL-lambda house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d1mfbl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain lambda constant domain, CL-lambda house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth H]SCOP2 FamilyAntibody variable domains 8091552 4007744 SCOP2 (2022-06-29)
B [auth H]SCOP2 FamilyAntibody constant domains 8091554 4007745 SCOP2 (2022-06-29)
B [auth H]SCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8091553 3000071 SCOP2 (2022-06-29)
B [auth H]SCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8091555 3000071 SCOP2 (2022-06-29)
A [auth L]SCOP2 FamilyAntibody variable domains 8091548 4007744 SCOP2 (2022-06-29)
A [auth L]SCOP2 FamilyAntibody constant domains 8091550 4007745 SCOP2 (2022-06-29)
A [auth L]SCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8091549 3000071 SCOP2 (2022-06-29)
A [auth L]SCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8091551 3000071 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth H]e1mfbH1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
A [auth L]e1mfbL1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth H]Se155-4 VH-CH1 Mus musculus (house mouse) IGHV1-5*01, IGHJ2*02, IGHJ2*03, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202609-0)
A [auth L]Se155-4 L-LAMBDA Mus musculus (house mouse) IGLV1*01, IGLJ1*01, IGLC1*01 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202609-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H]Heavy ChainIGHV1 -polysaccharideSAbDab (2026-03-13)
A [auth L]Light ChainIGLV1 LambdapolysaccharideSAbDab (2026-03-13)