1M9O | pdb_00001m9o

NMR structure of the first Zinc Binding domain of Nup475/TTP/TIS11

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m9oa1	Small proteins	CCCH zinc finger	CCCH zinc finger	CCCH zinc finger	Tristetraproline (ttp, tis11, nup475)	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1m9oa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CCCH zinc finger	8020403	4003893	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CCCH zinc finger-like	8032783	3001741	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-CCCH	e1m9oA1	A: few secondary structure elements	X: CCCH zinc finger	H: CCCH zinc finger (From Topology)	T: CCCH zinc finger	F: zf-CCCH	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	4.10.1000.10	Few Secondary Structures	Irregular	CCCH zinc finger	Zinc finger, CCCH-type	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tristetraproline	protein binding binding 14-3-3 protein binding DNA binding nucleic acid binding RNA binding mRNA binding mRNA 3'-UTR binding mRNA 3'-UTR AU-rich region binding RNA polymerase binding enzyme binding cation binding transition metal ion binding zinc ion binding protein binding binding 14-3-3 protein binding DNA binding nucleic acid binding RNA binding mRNA binding mRNA 3'-UTR binding mRNA 3'-UTR AU-rich region binding RNA polymerase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of cellular process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality positive regulation of cellular process regulation of cellular process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality positive regulation of cellular process RNA catabolic process regulation of biosynthetic process RNA destabilization regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound catabolic process positive regulation of RNA metabolic process positive regulation of catabolic process regulation of gene expression biosynthetic process regulation of RNA stability nucleic acid catabolic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process cellular response to stimulus response to stimulus signaling p38MAPK cascade intracellular signal transduction cell communication intracellular signaling cassette MAPK cascade signal transduction multicellular organismal process negative regulation of biological process negative regulation of interleukin-2 production regulation of cytokine production cytokine production negative regulation of cellular process regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of interleukin-2 production negative regulation of metabolic process interleukin-2 production negative regulation of cytokine production negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process nuclear-transcribed mRNA catabolic process, deadenylation-independent decay mRNA catabolic process nuclear-transcribed mRNA catabolic process mRNA metabolic process regulation of developmental process cellular developmental process homeostatic process cell development regulation of cell differentiation regulation of cell development multicellular organism development negative regulation of erythrocyte differentiation cell differentiation anatomical structure development negative regulation of cell differentiation regulation of immune system process myeloid cell homeostasis erythrocyte homeostasis developmental process regulation of multicellular organismal development negative regulation of developmental process hemopoiesis regulation of myeloid cell differentiation negative regulation of myeloid cell differentiation erythrocyte differentiation regulation of erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process regulation of hemopoiesis homeostasis of number of cells cell population proliferation regulation of cell population proliferation regulation of keratinocyte proliferation regulation of epithelial cell proliferation epithelial cell proliferation keratinocyte proliferation positive regulation of mRNA metabolic process positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay mRNA destabilization regulation of mRNA catabolic process regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay regulation of mRNA stability positive regulation of mRNA catabolic process regulation of mRNA metabolic process 3'-UTR-mediated mRNA destabilization response to fibroblast growth factor cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus response to growth factor cellular response to fibroblast growth factor stimulus response to stress response to wounding negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process fat cell differentiation positive regulation of fat cell differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of fat cell differentiation positive regulation of macromolecule biosynthetic process mRNA stabilization negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization positive regulation of biosynthetic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process RNA stabilization positive regulation of gene expression response to nutrient levels response to starvation regulation of miRNA-mediated gene silencing positive regulation of post-transcriptional gene silencing positive regulation of miRNA-mediated gene silencing regulation of gene silencing by regulatory ncRNA positive regulation of post-transcriptional gene silencing by RNA regulation of post-transcriptional gene silencing by regulatory ncRNA regulatory ncRNA-mediated post-transcriptional gene silencing regulatory ncRNA-mediated gene silencing miRNA-mediated post-transcriptional gene silencing regulation of post-transcriptional gene silencing post-transcriptional gene silencing RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport nuclear-transcribed mRNA poly(A) tail shortening regulation of localization intracellular mRNA localization positive regulation of intracellular mRNA localization regulation of intracellular mRNA localization regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response negative regulation of response to stimulus response to external stimulus regulation of inflammatory response regulation of response to stimulus negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response inflammatory response biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA RNA decapping deadenylation-independent decapping of nuclear-transcribed mRNA mRNA methylguanosine-cap decapping regulation of deadenylation-independent decapping of nuclear-transcribed mRNA protein biosynthetic process negative regulation of translation miRNA-mediated gene silencing by inhibition of translation protein metabolic process negative regulation of protein metabolic process regulation of protein metabolic process translation regulation of translation regulation of tumor necrosis factor production tumor necrosis factor superfamily cytokine production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production negative regulation of stem cell differentiation negative regulation of hematopoietic progenitor cell differentiation regulation of stem cell differentiation hematopoietic stem cell differentiation negative regulation of hematopoietic stem cell differentiation regulation of hematopoietic progenitor cell differentiation regulation of hematopoietic stem cell differentiation stem cell differentiation hematopoietic progenitor cell differentiation positive regulation of nuclear-transcribed mRNA poly(A) tail shortening regulation of nuclear-transcribed mRNA poly(A) tail shortening regulation of epidermal cell differentiation epidermis development epithelial cell differentiation regulation of epithelial cell differentiation epithelium development epidermal cell differentiation animal organ development tissue development skin development keratinocyte differentiation regulation of epidermis development regulation of keratinocyte differentiation response to peptide response to granulocyte macrophage colony-stimulating factor response to cytokine cellular response to cytokine stimulus cellular response to granulocyte macrophage colony-stimulating factor stimulus cellular response to tumor necrosis factor response to tumor necrosis factor regulation of molecular function regulation of catalytic activity negative regulation of polynucleotide adenylyltransferase activity negative regulation of molecular function negative regulation of catalytic activity regulation of transferase activity viral gene expression regulation of viral process negative regulation of viral process regulation of viral transcription negative regulation of viral transcription viral process viral transcription cellular response to epidermal growth factor stimulus response to epidermal growth factor response to glucocorticoid cellular response to glucocorticoid stimulus cellular response to corticosteroid stimulus response to corticosteroid response to hormone response to steroid hormone cellular response to steroid hormone stimulus cellular response to hormone stimulus regulation of epithelial cell apoptotic process regulation of apoptotic process regulation of programmed cell death cell death epithelial cell apoptotic process keratinocyte apoptotic process regulation of keratinocyte apoptotic process apoptotic process programmed cell death	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex cytoplasmic stress granule P-body protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex cytoplasmic stress granule P-body protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000571	Zinc finger, CCCH-type	Domain
A	IPR036855	Zinc finger, CCCH-type superfamily	Homologous Superfamily
A	IPR045877	RNA-binding protein ZFP36-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.