Annotations: 1LVF

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1lvfa_	All alpha proteins	STAT-like	t-snare proteins	t-snare proteins	Syntaxin 6, SNAP-25 homolog	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
B	d1lvfb_	All alpha proteins	STAT-like	t-snare proteins	t-snare proteins	Syntaxin 6, SNAP-25 homolog	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	t-snare proteins	8029091	4000986	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	t-snare proteins	8041470	3000366	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	t-snare proteins	8041470	3000366	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Syntaxin-6_N	e1lvfA1	A: alpha bundles	X: STAT-like	H: t-snare proteins (From Topology)	T: t-snare proteins	F: Syntaxin-6_N	ECOD (1.6)
B	Syntaxin-6_N	e1lvfB1	A: alpha bundles	X: STAT-like	H: t-snare proteins (From Topology)	T: t-snare proteins	F: Syntaxin-6_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.90	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	1.20.58.90	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09177	Syntaxin 6, N-terminal (Syntaxin-6_N)	Syntaxin 6, N-terminal	Members of this family, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE ...	Members of this family, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	syntaxin 6	protein binding binding SNARE binding syntaxin binding SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization synaptic vesicle to endosome fusion transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport synaptic vesicle endosomal processing organelle fusion cellular component organization vesicle organization localization organelle organization establishment of localization in cell cellular localization synaptic vesicle to endosome fusion transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport synaptic vesicle endosomal processing organelle fusion cellular component organization vesicle organization localization organelle organization establishment of localization in cell endosome organization cellular process cellular component organization or biogenesis endomembrane system organization membrane organization membrane fusion organelle membrane fusion vesicle fusion Golgi vesicle transport protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization intracellular protein transport regulation of localization regulation of biological process regulation of cellular process regulation of protein localization biological regulation regulation of cellular localization cytosolic transport retrograde transport, endosome to Golgi localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane organelle localization by membrane tethering organelle localization vesicle docking membrane docking	cellular anatomical entity endomembrane system membrane axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus cellular anatomical entity endomembrane system membrane axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus intracellular anatomical structure cytoplasm cytosol SNARE complex protein-containing complex membrane protein complex membrane-bounded organelle intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen early endosome endosome endosome membrane recycling endosome cytoplasmic vesicle membrane bounding membrane of organelle recycling endosome membrane vesicle membrane organelle membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network Golgi membrane trans-Golgi network membrane perinuclear region of cytoplasm transport vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000727	Target SNARE coiled-coil homology domain	Domain
A, B	IPR015260	Syntaxin 6, N-terminal	Domain
A, B	IPR006012	Syntaxin/epimorphin, conserved site	Conserved Site
A, B	IPR010989	SNARE	Homologous Superfamily
A, B	IPR045242	Syntaxin	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.