1KQ1
1.55 A Crystal structure of the pleiotropic translational regulator, Hfq
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth I] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
F [auth M] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Pleiotropic translational regulator Hfq | 8028168 | 4002164 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
C [auth H] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
E [auth K] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
G [auth S] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
H [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
I [auth Y] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
J [auth N] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
K [auth R] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
L [auth W] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8040547 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth I] | PF17209 | e1kq1I1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
F [auth M] | PF17209 | e1kq1M1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
A | PF17209 | e1kq1A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
B | PF17209 | e1kq1B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
C [auth H] | PF17209 | e1kq1H1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
E [auth K] | PF17209 | e1kq1K1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
G [auth S] | PF17209 | e1kq1S1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
H [auth T] | PF17209 | e1kq1T1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
I [auth Y] | PF17209 | e1kq1Y1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
J [auth N] | PF17209 | e1kq1N1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
K [auth R] | PF17209 | e1kq1R1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
L [auth W] | PF17209 | e1kq1W1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth I] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
F [auth M] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
A | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C [auth H] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E [auth K] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
G [auth S] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
H [auth T] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
I [auth Y] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
J [auth N] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
K [auth R] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
L [auth W] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain |