1KB6
Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1kb6a_ | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | Nuclear receptor | Vitamin D3 receptor, VDR, DNA-binding domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d1kb6b_ | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | Nuclear receptor | Vitamin D3 receptor, VDR, DNA-binding domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040136 | 3000068 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040136 | 3000068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | zf-C4 | e1kb6A1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
D [auth B] | zf-C4 | e1kb6B1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
D [auth B] | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF00105 | Double treble clef zinc finger, C4 type (zf-C4) | Zinc finger, C4 type (two domains) | In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other. | Domain |