1JMU
Crystal Structure of the Reovirus mu1/sigma3 Complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Reovirus mu1 protein-like | 8091410 | 4007739 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Reovirus mu1 protein-like | 8091411 | 3002506 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Reovirus mu1 protein-like | 8091411 | 3002506 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Reovirus mu1 protein-like | 8091411 | 3002506 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Reovirus mu1 protein-like | 8091411 | 3002506 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Reovirus mu1 protein-like | 8091411 | 3002506 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Outer capsid protein sigma 3 | 8071741 | 3001282 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Outer capsid protein sigma 3 | 8071741 | 3001282 | SCOP2B (2022-06-29) |
G | SCOP2 Family | Outer capsid protein sigma 3 | 8071740 | 4003686 | SCOP2 (2022-06-29) |
G | SCOP2 Superfamily | Outer capsid protein sigma 3 | 8071741 | 3001282 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Reovirus_M2_1st | e1jmuC1 | A: a+b complex topology | X: a+b domain in membrane penetration protein mu1 (From Topology) | H: a+b domain in membrane penetration protein mu1 (From Topology) | T: a+b domain in membrane penetration protein mu1 | F: Reovirus_M2_1st | ECOD (1.6) |
E | Reovirus_M2_1st | e1jmuE1 | A: a+b complex topology | X: a+b domain in membrane penetration protein mu1 (From Topology) | H: a+b domain in membrane penetration protein mu1 (From Topology) | T: a+b domain in membrane penetration protein mu1 | F: Reovirus_M2_1st | ECOD (1.6) |
B | Reovirus_M2_2nd | e1jmuB1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in membrane penetration protein mu1 (From Topology) | T: Jelly-roll domain in membrane penetration protein mu1 | F: Reovirus_M2_2nd | ECOD (1.6) |
B | Reovirus_M2_3rd | e1jmuB7 | A: alpha arrays | X: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | H: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | T: Alpha-helical domain in membrane penetration protein mu1 | F: Reovirus_M2_3rd | ECOD (1.6) |
F | Reovirus_M2_2nd | e1jmuF2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in membrane penetration protein mu1 (From Topology) | T: Jelly-roll domain in membrane penetration protein mu1 | F: Reovirus_M2_2nd | ECOD (1.6) |
F | Reovirus_M2_3rd | e1jmuF3 | A: alpha arrays | X: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | H: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | T: Alpha-helical domain in membrane penetration protein mu1 | F: Reovirus_M2_3rd | ECOD (1.6) |
F | Reovirus_M2_1st | e1jmuF1 | A: a+b complex topology | X: a+b domain in membrane penetration protein mu1 (From Topology) | H: a+b domain in membrane penetration protein mu1 (From Topology) | T: a+b domain in membrane penetration protein mu1 | F: Reovirus_M2_1st | ECOD (1.6) |
D | Reovirus_M2_2nd | e1jmuD3 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in membrane penetration protein mu1 (From Topology) | T: Jelly-roll domain in membrane penetration protein mu1 | F: Reovirus_M2_2nd | ECOD (1.6) |
D | Reovirus_M2_3rd | e1jmuD2 | A: alpha arrays | X: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | H: Alpha-helical domain in membrane penetration protein mu1 (From Topology) | T: Alpha-helical domain in membrane penetration protein mu1 | F: Reovirus_M2_3rd | ECOD (1.6) |
D | Reovirus_M2_1st | e1jmuD1 | A: a+b complex topology | X: a+b domain in membrane penetration protein mu1 (From Topology) | H: a+b domain in membrane penetration protein mu1 (From Topology) | T: a+b domain in membrane penetration protein mu1 | F: Reovirus_M2_1st | ECOD (1.6) |
H | Reovirus_cap | e1jmuH1 | A: a+b complex topology | X: Outer capsid protein sigma 3-related (From Topology) | H: Outer capsid protein sigma 3-related (From Topology) | T: Outer capsid protein sigma 3-related | F: Reovirus_cap | ECOD (1.6) |
I | Reovirus_cap | e1jmuI1 | A: a+b complex topology | X: Outer capsid protein sigma 3-related (From Topology) | H: Outer capsid protein sigma 3-related (From Topology) | T: Outer capsid protein sigma 3-related | F: Reovirus_cap | ECOD (1.6) |
G | Reovirus_cap | e1jmuG1 | A: a+b complex topology | X: Outer capsid protein sigma 3-related (From Topology) | H: Outer capsid protein sigma 3-related (From Topology) | T: Outer capsid protein sigma 3-related | F: Reovirus_cap | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05993 | Reovirus major virion structural protein Mu-1/Mu-1C (M2) (Reovirus_M2) | Reovirus major virion structural protein Mu-1/Mu-1C (M2) | - | Family | |
PF00979 | Reovirus outer capsid protein, Sigma 3 (Reovirus_cap) | Reovirus outer capsid protein, Sigma 3 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015961 | Mu1 membrane penetration protein, domain I | Homologous Superfamily | |
IPR015960 | Mu1 membrane penetration protein, domain IV | Homologous Superfamily | |
IPR036256 | Mu1/VP4 superfamily | Homologous Superfamily | |
IPR009113 | Outer capsid protein Mu1/VP4 | Family | |
IPR015962 | Mu1 membrane penetration protein, domain II | Homologous Superfamily | |
IPR044937 | Mu1 membrane penetration protein, domain III | Homologous Superfamily | |
IPR015961 | Mu1 membrane penetration protein, domain I | Homologous Superfamily | |
IPR015960 | Mu1 membrane penetration protein, domain IV | Homologous Superfamily | |
IPR036256 | Mu1/VP4 superfamily | Homologous Superfamily | |
IPR009113 | Outer capsid protein Mu1/VP4 | Family | |
IPR015962 | Mu1 membrane penetration protein, domain II | Homologous Superfamily | |
IPR044937 | Mu1 membrane penetration protein, domain III | Homologous Superfamily | |
IPR000153 | Reovirus, outer capsid sigma 3 | Family | |
IPR023634 | Reovirus, outer capsid sigma-3 domain superfamily | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :