1JLY | pdb_00001jly

CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1jlya1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)
Bd1jlyb1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAgglutinine1jlyA1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: AgglutininECOD (1.6)
AAgglutinin_1e1jlyA2 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Agglutinin_1ECOD (1.6)
BAgglutinine1jlyB1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: AgglutininECOD (1.6)
BAgglutinin_1e1jlyB2 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Agglutinin_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)
B2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036242Agglutinin domain superfamilyHomologous Superfamily
A, B
IPR008998Agglutinin domainDomain
A, B
IPR053237Natterin, C-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
FOR RESID:  AA0576

PSI-MOD :  N-formyl-L-alanine MOD:01915