1JLY | pdb_00001jly

CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1jlyb1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)
Ad1jlya1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BAgglutinine1jlyB1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: AgglutininECOD (1.6)
BAgglutinin_1e1jlyB2 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Agglutinin_1ECOD (1.6)
AAgglutinine1jlyA1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: AgglutininECOD (1.6)
AAgglutinin_1e1jlyA2 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Agglutinin_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)
A2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF07468Agglutinin domain (Agglutinin)Agglutinin domainDomain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036242Agglutinin domain superfamilyHomologous Superfamily
A, B
IPR008998Agglutinin domainDomain
A, B
IPR053237Natterin, C-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
FOR RESID:  AA0576

PSI-MOD :  N-formyl-L-alanine MOD:01915