1JLY | pdb_00001jly

CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1jlyb1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)
Ad1jlya1 All beta proteins beta-Trefoil Agglutinin Agglutinin Agglutinin (Amaranthus caudatus ) [TaxId: 3567 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAgglutinin 8042031 3000701 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAgglutinin 8042030 3000701 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRicin_B_lectin, RicinB_lectin_2e1jlyB1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Ricin_B_lectin, RicinB_lectin_2ECOD (v294.1)
ARicin_B_lectin, RicinB_lectin_2e1jlyA1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Ricin_B_lectin, RicinB_lectin_2ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)
A2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036242Agglutinin domain superfamilyHomologous Superfamily
A, B
IPR008998Agglutinin domainDomain
A, B
IPR053237Natterin, C-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
FOR RESID:  AA0576

PSI-MOD :  N-formyl-L-alanine MOD:01915