1JKG
Structural basis for the recognition of a nucleoporin FG-repeat by the NTF2-like domain of TAP-p15 mRNA nuclear export factor
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1jkga_ | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | NTF2-like | NTF2-related export protein 1 (p15) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1jkgb1 | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | NTF2-like | NTF2-like domain of Tip associating protein, TAP | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1jkgb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | NTF2-like | 8024705 | 4001021 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | NTF2-like | 8037084 | 3000472 | SCOP2 (2022-06-29) |
B | SCOP2 Family | NTF2-like | 8024706 | 4001021 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | NTF2-like | 8037085 | 3000472 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NTF2 | e1jkgA1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: NTF2 | ECOD (1.6) |
B | NTF2_1 | e1jkgB1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: NTF2_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02136 | Nuclear transport factor 2 (NTF2) domain (NTF2) | Nuclear transport factor 2 (NTF2) domain | This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. | Domain | |
PF22602 | Nuclear RNA export factor, NTF2 domain (NXF_NTF2) | Nuclear RNA export factor, NTF2 domain | This entry represents the NTF2 domain of nuclear RNA export factors (NFX), proteins that are involved in the nuclear export of mRNAs [1-5]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR045875 | Nuclear transport factor 2 | Family | |
IPR018222 | Nuclear transport factor 2, eukaryote | Domain | |
IPR002075 | Nuclear transport factor 2 domain | Domain | |
IPR030217 | Nuclear RNA export factor | Family | |
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR015245 | Nuclear RNA export factor Tap, RNA-binding domain | Domain | |
IPR005637 | TAP C-terminal (TAP-C) domain | Domain | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR018222 | Nuclear transport factor 2, eukaryote | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR002075 | Nuclear transport factor 2 domain | Domain |