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Crystal Structure of Mg(II)-and Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) B SCOP2 Family C-type lectin domain 8019859 4002453 SCOP2 (2022-06-29) B SCOP2 Superfamily C-type lectin-like 8032239 3001261 SCOP2 (2022-06-29) A SCOP2 Family C-type lectin domain 8019857 4002453 SCOP2 (2022-06-29) A SCOP2 Superfamily C-type lectin-like 8032237 3001261 SCOP2 (2022-06-29) C SCOP2 Family GLA-domain 8019858 4003544 SCOP2 (2022-06-29) C SCOP2 Superfamily GLA-domain 8032238 3001028 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) B PF00059 e1j34B1 A: a+b complex topology X: C-type lectin-like (From Homology) H: C-type lectin-like T: C-type lectin-like F: PF00059 ECOD (1.6) A PF00059 e1j34A1 A: a+b complex topology X: C-type lectin-like (From Homology) H: C-type lectin-like T: C-type lectin-like F: PF00059 ECOD (1.6) C PF00594 e1j34C1 A: few secondary structure elements X: GLA-domain (From Topology) H: GLA-domain (From Topology) T: GLA-domain F: PF00594 ECOD (1.6)
Chains Polymer Molecular Function Biological Process Cellular Component coagulation factor IX-binding protein B chain - coagulation factor IX-binding protein A chain - Coagulation factor IX
Chains Accession Name Type IPR001304 C-type lectin-like Domain IPR018378 C-type lectin, conserved site Conserved Site IPR016186 C-type lectin-like/link domain superfamily Homologous Superfamily IPR016187 C-type lectin fold Homologous Superfamily IPR001304 C-type lectin-like Domain IPR018378 C-type lectin, conserved site Conserved Site IPR016186 C-type lectin-like/link domain superfamily Homologous Superfamily IPR016187 C-type lectin fold Homologous Superfamily IPR009003 Peptidase S1, PA clan Homologous Superfamily IPR000294 Gamma-carboxyglutamic acid-rich (GLA) domain Domain IPR017857 Coagulation factor-like, Gla domain superfamily Homologous Superfamily IPR018097 EGF-like calcium-binding, conserved site Conserved Site IPR001314 Peptidase S1A, chymotrypsin family Family IPR033116 Serine proteases, trypsin family, serine active site Active Site IPR001254 Serine proteases, trypsin domain Domain IPR035972 Gamma-carboxyglutamic acid-rich (GLA) domain superfamily Homologous Superfamily IPR001881 EGF-like calcium-binding domain Domain IPR000742 EGF-like domain Domain IPR043504 Peptidase S1, PA clan, chymotrypsin-like fold Homologous Superfamily IPR000152 EGF-type aspartate/asparagine hydroxylation site PTM IPR018114 Serine proteases, trypsin family, histidine active site Active Site IPR012224 Peptidase S1A, coagulation factor VII/IX/X/C/Z Family
Protein Modification Annotation Modified Residue(s) Chain Residue(s) Description CGU Parent Component: GLU RESID :  AA0032 PSI-MOD :  L-gamma-carboxyglutamic acid MOD:00041