1J08 | pdb_00001j08

Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1j08a1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
B	d1j08b1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
C	d1j08c1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
D	d1j08d1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
F	d1j08f1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
G	d1j08g1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
H	d1j08h1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
E	d1j08e1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Archaeal PDI-like	8058562	4000134	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8058563	3000031	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8058564	3000031	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Thioredoxin	e1j08A1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
B	Thioredoxin	e1j08B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
C	Thioredoxin	e1j08C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
D	Thioredoxin	e1j08D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
F	Thioredoxin	e1j08F1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
G	Thioredoxin	e1j08G1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
H	Thioredoxin	e1j08H1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
E	Thioredoxin	e1j08E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012336	Thioredoxin-like fold	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011903	Disulfide oxidoreductase TON_0319-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.