Crystal Structure of Photosystem II
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2B (2022-06-29) |
| P [auth L] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2B (2022-06-29) |
| R [auth N] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032750 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8032750 | 3000736 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | HORMA | e1izlA2 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: HORMA | ECOD (v294.1) |
| O [auth J] | Biotin_carb_N | e1izlJ2 | A: a/b three-layered sandwiches | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (v294.1) |
| B | JmjC_2 | e1izlB1 | A: a/b three-layered sandwiches | X: Single-stranded left-handed beta-helix | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: JmjC_2 | ECOD (v294.1) |
| P [auth L] | AWS | e1izlL2 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: AWS | ECOD (v294.1) |
| T [auth Q] | DHDPS | e1izlQ1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
| F | DHDPS | e1izlF1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
| M [auth V] | DHDPS | e1izlV1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
| AA [auth 0] | DHDPS | e1izl01 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
| R [auth N] | HORMA | e1izlN3 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: HORMA | ECOD (v294.1) |
| D | Biotin_carb_N | e1izlD2 | A: a/b three-layered sandwiches | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (v294.1) |
| Q [auth M] | LHC | e1izlM1 | A: a/b three-layered sandwiches | X: Suppressor of Fused, C-terminal domain | H: HTH | T: winged helix domain | F: LHC | ECOD (v294.1) |
| C | LHC | e1izlC1 | A: a/b three-layered sandwiches | X: Suppressor of Fused, C-terminal domain | H: HTH | T: winged helix domain | F: LHC | ECOD (v294.1) |
| X [auth W] | DHDPS | e1izlW1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
| J [auth K] | DHDPS | e1izlK1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SH3 | T: Transmembrane protein 14A | F: DHDPS | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| M [auth V] | 1.10.760.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome Bc1 Complex | Chain D, domain 2 | CATH (4.3.0) |
| AA [auth 0] | 1.10.760.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome Bc1 Complex | Chain D, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B, P [auth L] | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
| E, S [auth P] | PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem II |














