1IZL | pdb_00001izl

Crystal Structure of Photosystem II


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1izla_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
O [auth J]d1izlj_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
Bd1izlb_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
P [auth L]d1izll_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
S [auth P]d1izlp_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Ed1izle_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
T [auth Q]d1izlq_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Fd1izlf_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
U [auth R]d1izlr_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Gd1izlg_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
V [auth S]d1izls_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Hd1izlh_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
W [auth T]d1izlt_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Id1izli_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Yd1izly_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
K [auth O]d1izlo_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
M [auth V]d1izlv_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
AA [auth 0]d1izl0_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
N [auth X]d1izlx_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
BA [auth 1]d1izl1_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
R [auth N]d1izln_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Dd1izld_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Q [auth M]d1izlm_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Cd1izlc_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Zd1izlz_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
L [auth U]d1izlu_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
X [auth W]d1izlw_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
J [auth K]d1izlk_ Low resolution protein structures Photosystems Photosystems Photosystems Photosystem II (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHORMAe1izlA2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: HORMAECOD (v294.1)
O [auth J]Biotin_carb_Ne1izlJ2 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: PreATP-grasp domainF: Biotin_carb_NECOD (v294.1)
BJmjC_2e1izlB1 A: a/b three-layered sandwichesX: Single-stranded left-handed beta-helixH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: JmjC_2ECOD (v294.1)
P [auth L]AWSe1izlL2 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: AWSECOD (v294.1)
T [auth Q]DHDPSe1izlQ1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)
FDHDPSe1izlF1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)
M [auth V]DHDPSe1izlV1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)
AA [auth 0]DHDPSe1izl01 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)
R [auth N]HORMAe1izlN3 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: HORMAECOD (v294.1)
DBiotin_carb_Ne1izlD2 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: PreATP-grasp domainF: Biotin_carb_NECOD (v294.1)
Q [auth M]LHCe1izlM1 A: a/b three-layered sandwichesX: Suppressor of Fused, C-terminal domainH: HTHT: winged helix domainF: LHCECOD (v294.1)
CLHCe1izlC1 A: a/b three-layered sandwichesX: Suppressor of Fused, C-terminal domainH: HTHT: winged helix domainF: LHCECOD (v294.1)
X [auth W]DHDPSe1izlW1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)
J [auth K]DHDPSe1izlK1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
M [auth V]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
AA [auth 0]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
P [auth L]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E,
S [auth P]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
O [auth J]
Photosystem II: Subunit PsbA
B,
P [auth L]
Photosystem II: Subunit PsbB
E,
S [auth P]
Photosystem II: Subunit PsbE
F,
T [auth Q]
Photosystem II: Subunit PsbF
G,
U [auth R]
Photosystem II: Subunit PsbG---
H,
V [auth S]
Photosystem II: Subunit PsbH---
I,
W [auth T]
Photosystem II: Subunit PsbI---
K [auth O],
Y
Photosystem II: Subunit PsbO---
AA [auth 0],
M [auth V]
Photosystem II: Subunit PsbV
BA [auth 1],
N [auth X]
Photosystem II: Subunit PsbX---
D,
R [auth N]
Photosystem II: Subunit PsbD
C,
Q [auth M]
Photosystem II: Subunit PsbC
L [auth U],
Z
Photosystem II: Subunit PsbU---
J [auth K],
X [auth W]
Photosystem II: Subunit PsbK-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
O [auth J]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
O [auth J]
IPR005867Photosystem II protein D1Family
A,
O [auth J]
IPR000484Photosynthetic reaction centre, L/MFamily
A,
O [auth J]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
O [auth J]
IPR055266Photosystem II protein D1/D2Family
B,
P [auth L]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
P [auth L]
IPR000932Photosystem antenna protein-likeFamily
B,
P [auth L]
IPR017486Photosystem II CP47 reaction centre proteinFamily
E,
S [auth P]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
S [auth P]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
S [auth P]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
S [auth P]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
S [auth P]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
T [auth Q]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
T [auth Q]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
T [auth Q]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AA [auth 0],
M [auth V]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
AA [auth 0],
M [auth V]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
AA [auth 0],
M [auth V]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
AA [auth 0],
M [auth V]
IPR009056Cytochrome c-like domainDomain
AA [auth 0],
M [auth V]
IPR029490Cytochrome c-550 domainDomain
D,
R [auth N]
IPR005868Photosystem II D2Family
D,
R [auth N]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
R [auth N]
IPR000484Photosynthetic reaction centre, L/MFamily
D,
R [auth N]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
R [auth N]
IPR055266Photosystem II protein D1/D2Family
C,
Q [auth M]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
Q [auth M]
IPR000932Photosystem antenna protein-likeFamily
C,
Q [auth M]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
Q [auth M]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
J [auth K],
X [auth W]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
J [auth K],
X [auth W]
IPR003687Photosystem II PsbKFamily