1IUF
LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1iufa1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Homeodomain-like | Centromere-binding | Ars-binding protein 1, ABP1 | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
A | d1iufa3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18107 | Fission yeast centromere protein N-terminal domain (HTH_ABP1_N) | Fission yeast centromere protein N-terminal domain | This domain is found in the fission yeast centromere protein (Abp1) in species such as Shizosaccharomyces pombe. The domain, referred to as Domain 1, is DNA-binding and makes up half of the N-terminal region [1]. | Domain | |
PF03221 | Tc5 transposase DNA-binding domain (HTH_Tnp_Tc5) | Tc5 transposase DNA-binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR004875 | DDE superfamily endonuclease domain | Domain | |
IPR006600 | HTH CenpB-type DNA-binding domain | Domain | |
IPR050863 | Centromere and Transposable Element-Derived Protein | Family | |
IPR041188 | ARS-binding protein 1, N-terminal | Domain |