1IT4 | pdb_00001it4

Solution structure of the prokaryotic Phospholipase A2 from Streptomyces violaceoruber


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1it4a_ All alpha proteins Phospholipase A2, PLA2 Phospholipase A2, PLA2 Prokaryotic phospholipase A2 Prokaryotic phospholipase A2 (Streptomyces violaceoruber ) [TaxId: 1935 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhospholipase A2, PLA2 8033015 3001690 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhospholip_A2_3e1it4A1 A: few secondary structure elementsX: Phospholipase A2, PLA2 (From Topology)H: Phospholipase A2, PLA2 (From Topology)T: Phospholipase A2, PLA2F: Phospholip_A2_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.90.10 Mainly Alpha Up-down Bundle Phospholipase A2 Phospholipase A2 domainCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
phospholipase A2 (prokaryotic/fungal)  M-CSA #528

The secreted phospholipase A2 (PLA2) from Streptomyces violaceoruber is the first identified prokaryotic PLA2. This Ca II dependent, lipolytic enzyme hydrolyses the 2-acyl ester bonds of 1,2-diacylglycero-3-phospholipids. The very high catalytic activities of secreted PLA2's relative to the aggregated substrates when compared to the monomeric substrates is due to interfacial activation.

Defined by 5 residues: ASP:A-43LEU:A-44HIS:A-64ASP:A-65ASP:A-85
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