1HI9 | pdb_00001hi9

Zn-dependent D-aminopeptidase DppA from Bacillus subtilis, a self-compartmentalizing protease.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d1hi9e_	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d1hi9d_	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1hi9c_	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1hi9b_	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1hi9a_	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Dipeptide transport protein	8033179	3000767	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dipeptide transport protein	8033179	3000767	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dipeptide transport protein	8033179	3000767	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dipeptide transport protein	8033179	3000767	SCOP2B (2022-06-29)
A	SCOP2 Family	Dipeptide transport protein	8020799	4003398	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dipeptide transport protein	8033179	3000767	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Pribosyltran	e1hi9E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v294.1)
D	Pribosyltran	e1hi9D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v294.1)
C	Pribosyltran	e1hi9C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v294.1)
B	Pribosyltran	e1hi9B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v294.1)
A	Peptidase_M55	e1hi9A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: Peptidase_M55	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.40.50.10780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Dipeptide transport protein	CATH (4.3.0)
E	3.30.1360.130	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
D	3.40.50.10780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Dipeptide transport protein	CATH (4.3.0)
D	3.30.1360.130	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
C	3.40.50.10780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Dipeptide transport protein	CATH (4.3.0)
C	3.30.1360.130	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
B	3.40.50.10780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Dipeptide transport protein	CATH (4.3.0)
B	3.30.1360.130	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
A	3.40.50.10780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Dipeptide transport protein	CATH (4.3.0)
A	3.30.1360.130	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF04951	D-aminopeptidase (Peptidase_M55)	D-aminopeptidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	DIPEPTIDE TRANSPORT PROTEIN DPPA	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding aminopeptidase activity exopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR036177	Peptidase M55, D-aminopeptidase superfamily	Homologous Superfamily
A, B, C, D, E	IPR007035	Peptidase M55, D-aminopeptidase	Family
A, B, C, D, E	IPR033824	D-aminopeptidase DppA	Family
A, B, C, D, E	IPR027476	D-aminopeptidase, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.