CRYSTAL STRUCTURE OF THE SM-RELATED PROTEIN OF P. ABYSSI: THE BIOLOGICAL UNIT IS A HEPTAMER
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Z [auth X] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| Y [auth W] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| X [auth V] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| W [auth U] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| V [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| U [auth S] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| T [auth R] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| S [auth Q] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| R [auth P] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| Q [auth O] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| P [auth N] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| O [auth M] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| N [auth L] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| M [auth K] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| L [auth J] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| K [auth I] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| J [auth H] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| I [auth G] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| H [auth F] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| F [auth D] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| D [auth B] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8030043 | 4001809 | SCOP2 (2022-06-29) |
| C [auth A] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2 (2022-06-29) |
| BA [auth Z] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| B [auth 2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| AA [auth Y] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
| A [auth 1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Z [auth X] | LSM | e1h64X1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| Y [auth W] | LSM | e1h64W1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| X [auth V] | LSM | e1h64V1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| W [auth U] | LSM | e1h64U1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| V [auth T] | LSM | e1h64T1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| U [auth S] | LSM | e1h64S1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| T [auth R] | LSM | e1h64R1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| S [auth Q] | LSM | e1h64Q1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| R [auth P] | LSM | e1h64P1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| Q [auth O] | LSM | e1h64O1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| P [auth N] | LSM | e1h64N1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| O [auth M] | LSM | e1h64M1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| N [auth L] | LSM | e1h64L1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| M [auth K] | LSM | e1h64K1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| L [auth J] | LSM | e1h64J1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| K [auth I] | LSM | e1h64I1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| J [auth H] | LSM | e1h64H1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| I [auth G] | LSM | e1h64G1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| H [auth F] | LSM | e1h64F1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| G [auth E] | LSM | e1h64E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| F [auth D] | LSM | e1h64D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| E [auth C] | LSM | e1h64C1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| D [auth B] | LSM | e1h64B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| C [auth A] | LSM | e1h64A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| BA [auth Z] | LSM | e1h64Z1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| B [auth 2] | LSM | e1h6421 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| AA [auth Y] | LSM | e1h64Y1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
| A [auth 1] | LSM | e1h6411 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001163 | Sm domain, eukaryotic/archaea-type | Domain | |
| IPR016487 | Sm-like protein Lsm6/SmF | Family | |
| IPR010920 | LSM domain superfamily | Homologous Superfamily | |
| IPR047575 | Sm domain | Domain | |
| IPR022901 | snRNP Sm-like, putative, archaea | Family |














