1GVM | pdb_00001gvm

CHOLINE BINDING DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1gvma_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)
B	d1gvmb_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)
C	d1gvmc_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)
D	d1gvmd_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)
E	d1gvme_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)
F	d1gvmf_	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	Choline binding domain of autolysin C-LytA	PNEUMOCOCCUS (Streptococcus pneumoniae ) [TaxId: 1313 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cell wall binding repeat	8036367	3000365	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cloacin	e1gvmA1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)
B	Cloacin	e1gvmB1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)
C	Cloacin	e1gvmC1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)
D	Cloacin	e1gvmD1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)
E	Cloacin	e1gvmE1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)
F	Cloacin	e1gvmF1	A: a/b three-layered sandwiches	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Cloacin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
B	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
C	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
D	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
E	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
F	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01473	Putative cell wall binding repeat (Choline_bind_1)	Putative cell wall binding repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	AUTOLYSIN	peptidoglycan muralytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity N-acetylmuramoyl-L-alanine amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process aminoglycan metabolic process peptidoglycan metabolic process metabolic process macromolecule metabolic process cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR002502	N-acetylmuramoyl-L-alanine amidase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036505	N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR018337	Cell wall/choline-binding repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.