1GU9 | pdb_00001gu9

Crystal Structure of Mycobacterium tuberculosis Alkylperoxidase AhpD

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1gu9b_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
E	d1gu9e_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
H	d1gu9h_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
L	d1gu9l_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
K	d1gu9k_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
J	d1gu9j_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
I	d1gu9i_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
G	d1gu9g_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
F	d1gu9f_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
D	d1gu9d_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
C	d1gu9c_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
A	d1gu9a_	All alpha proteins	AhpD-like	AhpD-like	AhpD	Antioxidant defense protein AhpD	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	AhpD-like	8038319	3001907	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	GatB_Yqey	e1gu9B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
E	GatB_Yqey	e1gu9E1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
H	GatB_Yqey	e1gu9H1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
L	GatB_Yqey	e1gu9L1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
K	GatB_Yqey	e1gu9K1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
J	GatB_Yqey	e1gu9J1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
I	GatB_Yqey	e1gu9I1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
G	GatB_Yqey	e1gu9G1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
F	GatB_Yqey	e1gu9F1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
D	GatB_Yqey	e1gu9D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
C	GatB_Yqey	e1gu9C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)
A	GatB_Yqey	e1gu9A1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: GatB_Yqey	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
E	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
H	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
L	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
K	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
J	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
I	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
G	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
F	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
D	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
C	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
A	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02627	Carboxymuconolactone decarboxylase family (CMD)	Carboxymuconolactone decarboxylase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	ALKYLHYDROPEROXIDASE D	peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity peroxiredoxin activity oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity	response to oxidative stress response to stimulus response to stress cell redox homeostasis cellular homeostasis homeostatic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004674	Alkylhydroperoxidase AhpD	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003779	Alkyl hydroperoxide reductase AhpD/CMD-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029032	AhpD-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004675	Alkylhydroperoxidase AhpD core	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.