1GPJ
Glutamyl-tRNA Reductase from Methanopyrus kandleri
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1gpja1 | All alpha proteins | Glutamyl tRNA-reductase dimerization domain | Glutamyl tRNA-reductase dimerization domain | Glutamyl tRNA-reductase dimerization domain | Glutamyl tRNA-reductase dimerization domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
A | d1gpja2 | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | Aminoacid dehydrogenase-like, C-terminal domain | Glutamyl tRNA-reductase middle domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
A | d1gpja3 | Alpha and beta proteins (a+b) | Ferredoxin-like | Glutamyl tRNA-reductase catalytic, N-terminal domain | Glutamyl tRNA-reductase catalytic, N-terminal domain | Glutamyl tRNA-reductase catalytic, N-terminal domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Glutamyl tRNA-reductase-like | 8001493 | 4000132 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glutamyl tRNA-reductase coenzyme-binding domain-like | 8001494 | 3000056 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8001497 | 3001023 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glutamyl tRNA-reductase dimerization domain | 8091374 | 3000027 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GlutR_dimer | e1gpjA1 | A: alpha duplicates or obligate multimers | X: Glutamyl tRNA-reductase dimerization domain (From Topology) | H: Glutamyl tRNA-reductase dimerization domain (From Topology) | T: Glutamyl tRNA-reductase dimerization domain | F: GlutR_dimer | ECOD (1.6) |
A | GlutR_N | e1gpjA2 | A: a+b two layers | X: Alpha-beta plaits | H: Glutamyl tRNA-reductase catalytic, N-terminal domain (From Topology) | T: Glutamyl tRNA-reductase catalytic, N-terminal domain | F: GlutR_N | ECOD (1.6) |
A | Shikimate_DH | e1gpjA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.460.30 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 1.10.1200.70 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00745 | Glutamyl-tRNAGlu reductase, dimerisation domain (GlutR_dimer) | Glutamyl-tRNAGlu reductase, dimerisation domain | - | Domain | |
PF05201 | Glutamyl-tRNAGlu reductase, N-terminal domain (GlutR_N) | Glutamyl-tRNAGlu reductase, N-terminal domain | - | Domain | |
PF01488 | Shikimate / quinate 5-dehydrogenase (Shikimate_DH) | Shikimate / quinate 5-dehydrogenase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR018214 | Glutamyl-tRNA reductase, conserved site | Conserved Site | |
IPR006151 | Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase | Domain | |
IPR036343 | Glutamyl-tRNA reductase, N-terminal domain superfamily | Homologous Superfamily | |
IPR015895 | Glutamyl-tRNA reductase, N-terminal | Domain | |
IPR015896 | Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain | Domain | |
IPR000343 | Glutamyl-tRNA reductase | Family | |
IPR036453 | Glutamyl tRNA-reductase dimerization domain superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
glutamyl-tRNA reductase M-CSA #804 | Glutamyl-tRNA Reductase catalyses the reduction of the activated alpha-carboxyl group of glutamate from glutamyl-tRNA using NADPH to form glutamate-1-semialdehyde(GSA). GSA is then converted to 5-aminolevulenic acid, a precursor molecule for the biosynthesis of tetrapyrroles like chlorophylls, hemes and coenzyme B12. | EC: 1.2.1.70 (PDB Primary Data) |