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 1GE7 | pdb_00001ge7

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1ge7a_ Alpha and beta proteins (a+b) Zincin-like Metalloproteases ('zincins'), catalytic domain Fungal zinc peptidase Fungal zinc peptidase (Grifola frondosa ) [TaxId: 5627 ], SCOPe (2.08)
Bd1ge7b_ Alpha and beta proteins (a+b) Zincin-like Metalloproteases ('zincins'), catalytic domain Fungal zinc peptidase Fungal zinc peptidase (Grifola frondosa ) [TaxId: 5627 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMetalloproteases (zincins), catalytic domain 8032522 3001975 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMetalloproteases (zincins), catalytic domain 8032522 3001975 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_20be1ge7A1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: Glyco_hydro_20bECOD (v295.2)
BGlyco_hydro_20be1ge7B1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: Glyco_hydro_20bECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.390.10 Alpha Beta 3-Layer(aba) Sandwich Collagenase (Catalytic Domain) Collagenase (Catalytic Domain)CATH (4.3.0)
B3.40.390.10 Alpha Beta 3-Layer(aba) Sandwich Collagenase (Catalytic Domain) Collagenase (Catalytic Domain)CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
PEPTIDYL-LYS METALLOENDOPEPTIDASE -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR024079Metallopeptidase, catalytic domain superfamilyHomologous Superfamily
A, B
IPR029463Lysine-specific metallo-endopeptidaseDomain
A, B
IPR050414Peptidase M35Family
A, B
IPR034115Peptidyl-Lys metallopeptidase catalytic domain, fungi and bacteriaDomain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
peptidyl-Lys metalloendopeptidase  M-CSA #786

Metalloendopeptidases such as the zinc endopeptidases often have the potential for tissue destruction or pathogenic bacterial infections and so are targets for drug design.

Defined by 5 residues: HIS:A-117GLU:A-118HIS:A-121ASP:A-130TYR:A-133
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Explore in 3D: M-CSA Motif Definition
Search M-CSA Motif
EC: 3.4.24.20 (PDB Primary Data)