1GD8 | pdb_00001gd8

THE CRYSTAL STRUCTURE OF BACTERIA-SPECIFIC L17 RIBOSOMAL PROTEIN.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I	d1gd8i_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
H	d1gd8h_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
G	d1gd8g_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
F	d1gd8f_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d1gd8e_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
D	d1gd8d_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d1gd8c_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
B	d1gd8b_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
A	d1gd8a_	Alpha and beta proteins (a+b)	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2B (2022-06-29)
A	SCOP2 Family	Prokaryotic ribosomal protein L17	8020364	4003526	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Prokaryotic ribosomal protein L17	8032744	3000995	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	OsmC	e1gd8I1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
H	OsmC	e1gd8H1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
G	OsmC	e1gd8G1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
F	OsmC	e1gd8F1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
E	OsmC	e1gd8E1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
D	OsmC	e1gd8D1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
C	OsmC	e1gd8C1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
B	OsmC	e1gd8B1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
A	Ribosomal_L17	e1gd8A1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Prokaryotic ribosomal protein L17	T: Prokaryotic ribosomal protein L17	F: Ribosomal_L17	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
H	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
G	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
F	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
E	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
D	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
C	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
B	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)
A	3.90.1030.10	Alpha Beta	Alpha-Beta Complex	50s Ribosomal Protein L17	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	50S RIBOSOMAL PROTEIN L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR000456	Large ribosomal subunit protein bL17	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.