1G5G | pdb_00001g5g

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1g5gf1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
F	d1g5gf2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
E	d1g5ge1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
E	d1g5ge2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
D	d1g5gd1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
D	d1g5gd2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
C	d1g5gc1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
C	d1g5gc2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
B	d1g5gb1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
B	d1g5gb2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
A	d1g5ga1	Membrane and cell surface proteins and peptides	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	Head and neck region of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)
A	d1g5ga2	Coiled coil proteins	Stalk segment of viral fusion proteins	Virus ectodomain	Virus ectodomain	Stalk of the ectodomain of NDV fusion glycoprotein	(avian paramyxovirus 1 ) [TaxId: 2560319 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2B (2022-06-29)
A	SCOP2 Family	Head and neck region of the ectodomain of NDV fusion glycoprotein	8023430	4003610	SCOP2 (2022-06-29)
A	SCOP2 Family	Virus ectodomain	8023433	4003841	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Head and neck region of the ectodomain of NDV fusion glycoprotein	8035810	3001117	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Virus ectodomain	8035813	3001628	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Rh5	e1g5gF1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: Rh5	ECOD (v294.1)
E	Rh5	e1g5gE1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: Rh5	ECOD (v294.1)
D	Rh5	e1g5gD1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: Rh5	ECOD (v294.1)
C	Rh5	e1g5gC1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: Rh5	ECOD (v294.1)
B	DUF5110	e1g5gB1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase	T: Glycoside hydrolase/deacetylase	F: DUF5110	ECOD (v294.1)
A	Fusion_gly	e1g5gA1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: Fusion_gly	ECOD (v294.1)
A	bCoV_S1_RBD	e1g5gA2	A: a/b three-layered sandwiches	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: Nop C-terminal domain	F: bCoV_S1_RBD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
F	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
F	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
E	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
E	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
E	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
D	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
D	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
D	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
C	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
C	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
C	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
B	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
B	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
B	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
A	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
A	1.10.287.2480	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
A	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Fusion glycoprotein F0	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000776	Precursor fusion glycoprotein F0, Paramyxoviridae	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.