1FXO | pdb_00001fxo

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TMP COMPLEX.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d1fxoh_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
G	d1fxog_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
F	d1fxof_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
E	d1fxoe_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
D	d1fxod_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
C	d1fxoc_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d1fxob_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A	d1fxoa_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	glucose-1-phosphate thymidylyltransferase	RmlA (RfbA)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2B (2022-06-29)
A	SCOP2 Family	Glucose-1-phosphate thymidylyltransferase	8020046	4000694	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotide-diphospho-sugar transferases	8032426	3000077	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HGTP_anticodon	e1fxoH1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
G	HGTP_anticodon	e1fxoG1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
F	HGTP_anticodon	e1fxoF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
E	HGTP_anticodon	e1fxoE1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
D	HGTP_anticodon	e1fxoD1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
C	HGTP_anticodon	e1fxoC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
B	HGTP_anticodon	e1fxoB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: HGTP_anticodon	ECOD (v294.1)
A	NTP_transferase	e1fxoA1	A: a/b three-layered sandwiches	X: Nucleotide-diphospho-sugar transferases	H: Nucleotide-diphospho-sugar transferases	T: Nucleotide-diphospho-sugar transferases	F: NTP_transferase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
G	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
F	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
E	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
D	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
C	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
B	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
A	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00483	Nucleotidyl transferase (NTP_transferase)	Nucleotidyl transferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding transferase activity nucleotidyltransferase activity catalytic activity glucose-1-phosphate thymidylyltransferase activity transferase activity, transferring phosphorus-containing groups cation binding ion binding metal ion binding	lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process oligosaccharide metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process lipopolysaccharide core region biosynthetic process polysaccharide metabolic process biosynthetic process lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process oligosaccharide metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process lipopolysaccharide core region biosynthetic process polysaccharide metabolic process biosynthetic process oligosaccharide biosynthetic process metabolic process cellular process macromolecule metabolic process lipid metabolic process nucleoside phosphate metabolic process nucleotide-sugar metabolic process dTDP-rhamnose biosynthetic process nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process small molecule metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005835	Nucleotidyl transferase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005907	Glucose-1-phosphate thymidylyltransferase, short form	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.