1FFU

CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA WHICH LACKS THE MO-PYRANOPTERIN MOIETY OF THE MOLYBDENUM COFACTOR


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1ffua1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Ad1ffua2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Dd1ffud1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Dd1ffud2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Bd1ffub1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain-like CO dehydrogenase molybdoprotein N-domain-like Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Bd1ffub2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Carbon monoxide (CO) dehydrogenase molybdoprotein (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Ed1ffue1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain-like CO dehydrogenase molybdoprotein N-domain-like Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Ed1ffue2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Carbon monoxide (CO) dehydrogenase molybdoprotein (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Cd1ffuc1 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase flavoprotein C-terminal domain-like Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Cd1ffuc2 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain-like FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein N-terminal domain-like Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Fd1ffuf1 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase flavoprotein C-terminal domain-like Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)
Fd1ffuf2 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain-like FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein N-terminal domain-like Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain (Hydrogenophaga pseudoflava ) [TaxId: 47421 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCO dehydrogenase molybdoprotein N-domain-like 8035007 3000847 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMolybdenum cofactor-binding domain 8036451 3000625 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCO dehydrogenase molybdoprotein N-domain-like 8035007 3000847 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMolybdenum cofactor-binding domain 8036451 3000625 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCO dehydrogenase flavoprotein C-terminal domain-like 8035373 3001921 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFAD-binding/transporter-associated domain-like 8036710 3000913 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFAD-binding/transporter-associated domain-like 8036710 3000913 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCO dehydrogenase flavoprotein C-terminal domain-like 8035373 3001921 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFer2_2e1ffuA1 A: alpha bundlesX: CO dehydrogenase ISP C-domain like (From Topology)H: CO dehydrogenase ISP C-domain like (From Topology)T: CO dehydrogenase ISP C-domain likeF: Fer2_2ECOD (1.6)
AFer2_3e1ffuA2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Fer2_3ECOD (1.6)
DFer2_2e1ffuD1 A: alpha bundlesX: CO dehydrogenase ISP C-domain like (From Topology)H: CO dehydrogenase ISP C-domain like (From Topology)T: CO dehydrogenase ISP C-domain likeF: Fer2_2ECOD (1.6)
DFer2_3e1ffuD2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Fer2_3ECOD (1.6)
BAld_Xan_dh_C2e1ffuB1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: Molybdenum cofactor-binding domainF: Ald_Xan_dh_C2ECOD (1.6)
BAld_Xan_dh_Ce1ffuB2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Ald_Xan_dh_CECOD (1.6)
EAld_Xan_dh_C2e1ffuE3 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: Molybdenum cofactor-binding domainF: Ald_Xan_dh_C2ECOD (1.6)
EAld_Xan_dh_Ce1ffuE2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Ald_Xan_dh_CECOD (1.6)
CCO_deh_flav_Ce1ffuC1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: CO_deh_flav_CECOD (1.6)
CFAD_binding_5e1ffuC2 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_5ECOD (1.6)
FCO_deh_flav_Ce1ffuF1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: CO_deh_flav_CECOD (1.6)
FFAD_binding_5e1ffuF2 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_5ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF01799[2Fe-2S] binding domain (Fer2_2)[2Fe-2S] binding domain- Domain
A, D
PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domain- Domain
B, E
PF01315Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain (Ald_Xan_dh_C)Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain- Domain
B, E
PF20256Molybdopterin cofactor-binding domain (MoCoBD_2)Molybdopterin cofactor-binding domain- Domain
B, E
PF02738Molybdopterin cofactor-binding domain (MoCoBD_1)Molybdopterin cofactor-binding domain- Domain
C, F
PF00941FAD binding domain in molybdopterin dehydrogenase (FAD_binding_5)FAD binding domain in molybdopterin dehydrogenase- Family
C, F
PF03450CO dehydrogenase flavoprotein C-terminal domain (CO_deh_flav_C)CO dehydrogenase flavoprotein C-terminal domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D
CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE - -
B, E
CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE - -
C, F
CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, D
IPR002888[2Fe-2S]-bindingDomain
A, D
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
A, D
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
A, D
IPR036884[2Fe-2S]-binding domain superfamilyHomologous Superfamily
A, D
IPR051452Diverse OxidoreductasesFamily
A, D
IPR012675Beta-grasp domain superfamilyHomologous Superfamily
B, E
IPR046867Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domainDomain
B, E
IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerheadDomain
B, E
IPR012780Carbon-monoxide dehydrogenase, large subunitFamily
B, E
IPR016208Aldehyde oxidase/xanthine dehydrogenase-likeFamily
B, E
IPR036856Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamilyHomologous Superfamily
B, E
IPR037165Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamilyHomologous Superfamily
B, E
IPR008274Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domainDomain
C, F
IPR016167FAD-binding, type PCMH, subdomain 1Homologous Superfamily
C, F
IPR036683CO dehydrogenase flavoprotein, C-terminal domain superfamilyHomologous Superfamily
C, F
IPR051312Diverse Substrate OxidoreductasesFamily
C, F
IPR036318FAD-binding, type PCMH-like superfamilyHomologous Superfamily
C, F
IPR016169FAD-binding, type PCMH, subdomain 2Homologous Superfamily
C, F
IPR016166FAD-binding domain, PCMH-typeDomain
C, F
IPR005107CO dehydrogenase flavoprotein, C-terminalDomain
C, F
IPR002346Molybdopterin dehydrogenase, FAD-bindingDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B, E
ARO Parent Component: ARG

RESIDAA0215

PSI-MOD :  4-hydroxy-L-arginine MOD:00220
B, E
CSZ Parent Component: CYS

RESIDAA0215 , AA0277

PSI-MOD :  4-hydroxy-L-arginine MOD:00220 , S-selenyl-L-cysteine MOD:00282