1FCQ

CRYSTAL STRUCTURE (MONOCLINIC) OF BEE VENOM HYALURONIDASE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1fcqa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Bee venom hyaluronidase	Bee venom hyaluronidase	honey bee (Apis mellifera ) [TaxId: 7460 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	(Trans)glycosidases	8035642	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_56	e1fcqA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_56	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01630	Hyaluronidase (Glyco_hydro_56)	Hyaluronidase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	HYALURONOGLUCOSAMINIDASE	hyalurononglucosaminidase activity hydrolase activity, acting on glycosyl bonds hexosaminidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process organic substance metabolic process primary metabolic process metabolic process response to stimulus defense response response to stress	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001329	Glycoside hydrolase family 56, bee venom hyaluronidase	Family
A	IPR018155	Hyaluronidase	Family
A	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	Alpha/Beta monotopic/peripheral	Transglycosidases	Hyaluronidase

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	hyaluronoglucosaminidase M-CSA #616	Bee venom hyaluronidase is an endo-N-acetyl-D-hexosaminidase that specifically cleaves the beta-1,4-glycosidic bond between N-acetyl glucosamine (GlcNAc) and D-glucuronic acid (GlcA) in hyaluronic acid. It degrades hyaluronic acid in the extracellular matrix of skin, so facilitating penetration of venom constituents into the body. The bee venom enzyme shows some sequence identity with human hyaluronidases, which are involved in hyaluronic acid turnover and also in fertilisation. Bee venom hyaluronidase has been classified with the mammalian enzymes in the glycosidase family 56.	Defined by 5 residues: ASP:A-111GLU:A-113TYR:A-184TYR:A-227TRP:A-301 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.2.1.35 (PDB Primary Data) Search M-CSA Motif + EC 3.2.1.35

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.