1EM8

Crystal structure of chi and psi subunit heterodimer from DNA POL III

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1em8b_	Alpha and beta proteins (a/b)	DNA polymerase III psi subunit	DNA polymerase III psi subunit	DNA polymerase III psi subunit	DNA polymerase III psi subunit	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d1em8d_	Alpha and beta proteins (a/b)	DNA polymerase III psi subunit	DNA polymerase III psi subunit	DNA polymerase III psi subunit	DNA polymerase III psi subunit	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1em8a_	Alpha and beta proteins (a/b)	DNA polymerase III chi subunit	DNA polymerase III chi subunit	DNA polymerase III chi subunit	DNA polymerase III chi subunit	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1em8c_	Alpha and beta proteins (a/b)	DNA polymerase III chi subunit	DNA polymerase III chi subunit	DNA polymerase III chi subunit	DNA polymerase III chi subunit	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	DNA polymerase III psi subunit	8023304	4001005	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	DNA polymerase III psi subunit	8035684	3000417	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	DNA polymerase III psi subunit	8035684	3000417	SCOP2B (2022-06-29)
A	SCOP2 Family	DNA polymerase III chi subunit	8023300	4001070	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DNA polymerase III chi subunit	8035680	3000660	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	DNA polymerase III chi subunit	8035680	3000660	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DNA_III_psi	e1em8B1	A: a/b three-layered sandwiches	X: DNA polymerase III psi subunit (From Topology)	H: DNA polymerase III psi subunit (From Topology)	T: DNA polymerase III psi subunit	F: DNA_III_psi	ECOD (1.6)
D	DNA_III_psi	e1em8D1	A: a/b three-layered sandwiches	X: DNA polymerase III psi subunit (From Topology)	H: DNA polymerase III psi subunit (From Topology)	T: DNA polymerase III psi subunit	F: DNA_III_psi	ECOD (1.6)
A	DNA_pol3_chi	e1em8A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_pol3_chi	ECOD (1.6)
C	DNA_pol3_chi	e1em8C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DNA_pol3_chi	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.10220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	DNA polymerase III, psi subunit	CATH (4.3.0)
D	3.40.50.10220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	DNA polymerase III, psi subunit	CATH (4.3.0)
A	3.40.50.10110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	DNA polymerase III subunit chi	CATH (4.3.0)
C	3.40.50.10110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	DNA polymerase III subunit chi	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF03603	DNA polymerase III psi subunit (DNA_III_psi)	DNA polymerase III psi subunit	-	Family
A, C	PF04364	DNA polymerase III chi subunit, HolC (DNA_pol3_chi)	DNA polymerase III chi subunit, HolC	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	DNA POLYMERASE III PSI SUBUNIT	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups nuclease activity hydrolase activity, acting on ester bonds 3'-5' exonuclease activity hydrolase activity exonuclease activity	cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular aromatic compound metabolic process response to stimulus response to radiation response to abiotic stimulus DNA-templated DNA replication	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex transferase complex intracellular membrane-bounded organelle cellular anatomical entity DNA polymerase complex transferase complex, transferring phosphorus-containing groups intracellular organelle DNA polymerase III complex organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex transferase complex intracellular membrane-bounded organelle cellular anatomical entity DNA polymerase complex transferase complex, transferring phosphorus-containing groups intracellular organelle DNA polymerase III complex organelle DNA polymerase III, clamp loader complex intracellular protein-containing complex protein-DNA complex chromosome intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle
A, C	DNA POLYMERASE III CHI SUBUNIT	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding	cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular aromatic compound metabolic process response to stimulus response to radiation response to abiotic stimulus regulation of DNA-templated DNA replication initiation regulation of cellular process positive regulation of DNA replication positive regulation of biological process positive regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA-templated DNA replication regulation of biological process positive regulation of nucleobase-containing compound metabolic process DNA replication initiation biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process positive regulation of DNA metabolic process positive regulation of nitrogen compound metabolic process regulation of DNA-templated DNA replication positive regulation of DNA-templated DNA replication regulation of metabolic process positive regulation of DNA-templated DNA replication initiation regulation of DNA replication regulation of DNA metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex transferase complex intracellular membrane-bounded organelle cellular anatomical entity DNA polymerase complex transferase complex, transferring phosphorus-containing groups intracellular organelle DNA polymerase III complex organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex transferase complex intracellular membrane-bounded organelle cellular anatomical entity DNA polymerase complex transferase complex, transferring phosphorus-containing groups intracellular organelle DNA polymerase III complex organelle DNA polymerase III, clamp loader complex intracellular protein-containing complex protein-DNA complex chromosome intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR018382	DNA polymerase III, psi subunit, subgroup	Family
B, D	IPR036654	DNA polymerase III, psi subunit superfamily	Homologous Superfamily
B, D	IPR004615	DNA polymerase III, psi subunit	Family
A, C	IPR007459	DNA polymerase III chi subunit, HolC	Family
A, C	IPR036768	DNA polymerase III subunit chi superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.