1DLP | pdb_00001dlp

STRUCTURAL CHARACTERIZATION OF THE NATIVE FETUIN-BINDING PROTEIN SCILLA CAMPANULATA AGGLUTININ (SCAFET): A NOVEL TWO-DOMAIN LECTIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1dlpf1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)
E	d1dlpe1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)
D	d1dlpd1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)
C	d1dlpc1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)
B	d1dlpb1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)
A	d1dlpa1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Fetuin-binding protein Scafet precursor	(Hyacinthoides hispanica ) [TaxId: 81759 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2B (2022-06-29)
A	SCOP2 Family	alpha-D-mannose-specific plant lectins	8030566	4002774	SCOP2 (2022-06-29)
A	SCOP2 Family	alpha-D-mannose-specific plant lectins	8030567	4002774	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha-D-mannose-specific plant lectins	8042945	3001730	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha-D-mannose-specific plant lectins	8042946	3001730	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Ldl_recept_b	e1dlpF1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)
E	Ldl_recept_b	e1dlpE1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)
D	Ldl_recept_b	e1dlpD1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)
C	Ldl_recept_b	e1dlpC1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)
B	Ldl_recept_b	e1dlpB1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)
A	Ldl_recept_b	e1dlpA1	A: alpha bundles	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Cloacin translocation domain	F: Ldl_recept_b	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
E	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
D	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
C	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
B	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
A	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	LECTIN SCAFET PRECURSOR	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001480	Bulb-type lectin domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.