1DGJ | pdb_00001dgj

CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1dgja1	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	Aldehyde oxidoreductase, domain 2	(Desulfovibrio desulfuricans ) [TaxId: 876 ],	SCOPe (2.08)
A	d1dgja2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin domains from multidomain proteins	Aldehyde oxidoreductase, N-terminal domain	(Desulfovibrio desulfuricans ) [TaxId: 876 ],	SCOPe (2.08)
A	d1dgja3	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	CO dehydrogenase molybdoprotein N-domain-like	CO dehydrogenase molybdoprotein N-domain-like	Aldehyde oxidoreductase, domain 3	(Desulfovibrio desulfuricans ) [TaxId: 876 ],	SCOPe (2.08)
A	d1dgja4	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Aldehyde oxidoreductase	(Desulfovibrio desulfuricans ) [TaxId: 876 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	2Fe-2S ferredoxin domains from multidomain proteins	8022152	4000241	SCOP2 (2022-06-29)
A	SCOP2 Family	CO dehydrogenase molybdoprotein N-domain-like	8022623	4001129	SCOP2 (2022-06-29)
A	SCOP2 Family	Molybdenum cofactor-binding domain	8024063	4001972	SCOP2 (2022-06-29)
A	SCOP2 Family	CO dehydrogenase ISP C-domain like	8025306	4001010	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	2Fe-2S ferredoxin-like	8034532	3000113	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8035003	3000847	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Molybdenum cofactor-binding domain	8036442	3000625	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CO dehydrogenase ISP C-domain like	8037685	3000439	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PAP2	e1dgjA1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: PAP2	ECOD (develop294)
A	S4	e1dgjA3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: S4	ECOD (develop294)
A	Biotin_carb_C	e1dgjA4	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: Biotin_carb_C	ECOD (develop294)
A	Mlh1_C	e1dgjA2	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Mlh1_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
A	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)
A	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ALDEHYDE OXIDOREDUCTASE	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR054705	Molybdopterin-dependent aldehyde oxidoreductase	Family
A	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
A	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Domain
A	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
A	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
A	IPR036856	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Homologous Superfamily
A	IPR037165	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Homologous Superfamily
A	IPR046867	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Domain
A	IPR002888	[2Fe-2S]-binding	Domain
A	IPR036884	[2Fe-2S]-binding domain superfamily	Homologous Superfamily
A	IPR016208	Aldehyde oxidase/xanthine dehydrogenase-like	Family
A	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
A	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.