1DEQ | pdb_00001deq

THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1deqa_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
D	d1deqd_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
H [auth N]	d1deqn_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
K [auth Q]	d1deqq_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d1deqb_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E	d1deqe_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
I [auth O]	d1deqo_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
L [auth R]	d1deqr_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
G [auth M]	d1deqm_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
N [auth Z]	d1deqz_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d1deqc_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
F	d1deqf_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
J [auth P]	d1deqp_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
M [auth S]	d1deqs_	Low resolution protein structures	Blood clotting	Blood clotting	Blood clotting	Fibrinogen	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	MIR	e1deqB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
E	MIR	e1deqE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
I [auth O]	Sema	e1deqO1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Sema	ECOD (v294.1)
L [auth R]	MIR	e1deqR1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
C	MIR	e1deqC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
F	MIR	e1deqF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
J [auth P]	MIR	e1deqP1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
M [auth S]	MIR	e1deqS1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, E, I [auth O], L [auth R]	PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain (Fibrinogen_C)	Fibrinogen beta and gamma chains, C-terminal globular domain		Domain
C, F, J [auth P], M [auth S]	PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain (Fibrinogen_C)	Fibrinogen beta and gamma chains, C-terminal globular domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, H [auth N], K [auth Q]	FIBRINOGEN (ALPHA CHAIN)	protein binding binding signaling receptor binding protein-macromolecule adaptor activity molecular adaptor activity	cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis response to stimulus immune response immune system process adaptive immune response regulation of biological process regulation of cellular process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis response to stimulus immune response immune system process adaptive immune response regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion heterotypic cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of heterotypic cell-cell adhesion regulation of cell-cell adhesion regulation of heterotypic cell-cell adhesion positive regulation of cellular process multicellular organismal process regulation of body fluid levels blood coagulation, common pathway protein maturation response to stress blood coagulation, fibrin clot formation coagulation protein metabolic process regulation of biological quality response to wounding wound healing protein activation cascade hemostasis primary metabolic process gene expression macromolecule biosynthetic process blood coagulation biosynthetic process metabolic process macromolecule metabolic process regulation of response to external stimulus negative regulation of biological process regulation of response to wounding regulation of coagulation regulation of response to stress regulation of multicellular organismal process regulation of hemostasis negative regulation of response to stimulus negative regulation of wound healing regulation of blood coagulation negative regulation of blood coagulation response to external stimulus negative regulation of response to wounding negative regulation of hemostasis fibrinolysis negative regulation of coagulation regulation of response to stimulus negative regulation of response to external stimulus regulation of wound healing negative regulation of multicellular organismal process biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to biotic stimulus defense response to other organism innate immune response response to external biotic stimulus homotypic cell-cell adhesion cell activation platelet aggregation platelet activation	protein-containing complex cellular anatomical structure extracellular region extracellular protein-containing complex fibrinogen complex
B, E, I [auth O], L [auth R]	FIBRINOGEN (BETA CHAIN)	protein binding binding signaling receptor binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis response to stimulus immune response immune system process cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis response to stimulus immune response immune system process adaptive immune response biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to other organism response to stress innate immune response response to external biotic stimulus multicellular organismal process regulation of body fluid levels wound healing protein activation cascade hemostasis biological regulation primary metabolic process gene expression macromolecule biosynthetic process blood coagulation protein maturation biosynthetic process blood coagulation, fibrin clot formation coagulation metabolic process protein metabolic process macromolecule metabolic process regulation of biological quality response to wounding homotypic cell-cell adhesion cell activation platelet aggregation cell-cell adhesion platelet activation	protein-containing complex cellular anatomical structure extracellular region extracellular protein-containing complex fibrinogen complex
G [auth M], N [auth Z]	FIBRINOGEN	-	-	-
C, F, J [auth P], M [auth S]	FIBRINOGEN (GAMMA CHAIN)	protein binding binding signaling receptor binding cation binding ion binding metal ion binding small molecule binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis multicellular organismal process regulation of body fluid levels wound healing cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis multicellular organismal process regulation of body fluid levels wound healing response to stimulus homotypic cell-cell adhesion cell activation hemostasis biological regulation platelet aggregation blood coagulation cell-cell adhesion response to stress coagulation regulation of biological quality response to wounding platelet activation	protein-containing complex cellular anatomical structure extracellular region extracellular protein-containing complex fibrinogen complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, H [auth N], K [auth Q]	IPR037579	Fibrinogen/angiopoietin-like	Family
A, D, H [auth N], K [auth Q]	IPR012290	Fibrinogen, alpha/beta/gamma chain, coiled coil domain	Domain
A, D, H [auth N], K [auth Q]	IPR021996	Fibrinogen alpha C domain	Domain
B, E, I [auth O], L [auth R]	IPR037579	Fibrinogen/angiopoietin-like	Family
B, E, I [auth O], L [auth R]	IPR012290	Fibrinogen, alpha/beta/gamma chain, coiled coil domain	Domain
B, E, I [auth O], L [auth R]	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Domain
B, E, I [auth O], L [auth R]	IPR020837	Fibrinogen, conserved site	Conserved Site
B, E, I [auth O], L [auth R]	IPR036056	Fibrinogen-like, C-terminal	Homologous Superfamily
B, E, I [auth O], L [auth R]	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Homologous Superfamily
C, F, J [auth P], M [auth S]	IPR037579	Fibrinogen/angiopoietin-like	Family
C, F, J [auth P], M [auth S]	IPR012290	Fibrinogen, alpha/beta/gamma chain, coiled coil domain	Domain
C, F, J [auth P], M [auth S]	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Domain
C, F, J [auth P], M [auth S]	IPR020837	Fibrinogen, conserved site	Conserved Site
C, F, J [auth P], M [auth S]	IPR036056	Fibrinogen-like, C-terminal	Homologous Superfamily
C, F, J [auth P], M [auth S]	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.