STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth C] | d1cwpc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP | Cucumovirus coat protein | (Cowpea chlorotic mottle virus ) [TaxId: 12303 ], | SCOPe (2.08) |
| E [auth B] | d1cwpb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP | Cucumovirus coat protein | (Cowpea chlorotic mottle virus ) [TaxId: 12303 ], | SCOPe (2.08) |
| D [auth A] | d1cwpa_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP | Cucumovirus coat protein | (Cowpea chlorotic mottle virus ) [TaxId: 12303 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F [auth C] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040790 | 3000918 | SCOP2B (2022-06-29) |
| E [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040790 | 3000918 | SCOP2B (2022-06-29) |
| D [auth A] | SCOP2 Family | Bromoviridae-like VP | 8028411 | 4003474 | SCOP2 (2022-06-29) |
| D [auth A] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8040790 | 3000918 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth C] | TNF | e1cwpC1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
| E [auth B] | TNF | e1cwpB1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
| D [auth A] | TNF | e1cwpA1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth C] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (4.3.0) |
| E [auth B] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (4.3.0) |
| D [auth A] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| D [auth A], E [auth B], F [auth C] | Coat protein | - | ||
| B [auth E] | RNA (5'-R(*AP*U)-3') | - | - | - |
| A [auth D], C [auth F] | RNA (5'-R(*AP*UP*AP*U)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| D [auth A], E [auth B], F [auth C] | IPR002009 | Bromovirus coat protein | Family |
