1CN3
INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Group I dsDNA viruses | 8040828 | 3000939 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8040828 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8040828 | 3000939 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group I dsDNA viruses | 8040828 | 3000939 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group I dsDNA viruses | 8040828 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Polyoma_coat | e1cn3C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
D | Polyoma_coat | e1cn3D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
E | Polyoma_coat | e1cn3E1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
A | Polyoma_coat | e1cn3A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
B | Polyoma_coat | e1cn3B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
D | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
E | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
A | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
B | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily | |
IPR000662 | Capsid protein VP1,Polyomavirus | Family | |
IPR036931 | Polyomavirus capsid protein VP1 superfamily | Homologous Superfamily | |
IPR001070 | Polyomavirus coat protein VP2 | Family |