1CJY | pdb_00001cjy

HUMAN CYTOSOLIC PHOSPHOLIPASE A2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1cjya1	All beta proteins	C2 domain-like	C2 domain (Calcium/lipid-binding domain, CaLB)	PLC-like (P variant)	Domain from cytosolic phospholipase A2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1cjya2	Alpha and beta proteins (a/b)	FabD/lysophospholipase-like	FabD/lysophospholipase-like	Lysophospholipase	Cytosolic phospholipase A2 catalytic domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1cjyb1	All beta proteins	C2 domain-like	C2 domain (Calcium/lipid-binding domain, CaLB)	PLC-like (P variant)	Domain from cytosolic phospholipase A2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1cjyb2	Alpha and beta proteins (a/b)	FabD/lysophospholipase-like	FabD/lysophospholipase-like	Lysophospholipase	Cytosolic phospholipase A2 catalytic domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Lysophospholipase	8020449	4000780	SCOP2 (2022-06-29)
A	SCOP2 Family	PLC-like (P variant)	8028333	4002218	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FabD/lysophospholipase-like	8032829	3001121	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C2 domain (calcium/lipid-binding domain, calb)	8040712	3000965	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	FabD/lysophospholipase-like	8032829	3001121	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C2 domain (calcium/lipid-binding domain, calb)	8040712	3000965	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C2_1	e1cjyA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: C2 domain (From Topology)	T: C2 domain	F: C2_1	ECOD (1.6)
A	PLA2_B	e1cjyA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: FabD/lysophospholipase-like	F: PLA2_B	ECOD (1.6)
B	C2_1	e1cjyB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: C2 domain (From Topology)	T: C2 domain	F: C2_1	ECOD (1.6)
B	PLA2_B	e1cjyB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: FabD/lysophospholipase-like	F: PLA2_B	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (4.3.0)
A	3.40.1090.10	Alpha Beta	3-Layer(aba) Sandwich	Cytosolic phospholipase A2 catalytic domain	Cytosolic phospholipase A2 catalytic domain	CATH (4.3.0)
B	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (4.3.0)
B	3.40.1090.10	Alpha Beta	3-Layer(aba) Sandwich	Cytosolic phospholipase A2 catalytic domain	Cytosolic phospholipase A2 catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01735	Lysophospholipase catalytic domain (PLA2_B)	Lysophospholipase catalytic domain	This family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 and cytosolic phospholipase A2 EC:3.1.4 which also has a C2 domain Pfam:PF00168. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capabl ...	This family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 and cytosolic phospholipase A2 EC:3.1.4 which also has a C2 domain Pfam:PF00168. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capable in vitro of hydrolysing all phospholipids extractable form yeast cells [1]. Cytosolic phospholipase A2 associates with natural membranes in response to physiological increases in Ca2+ and selectively hydrolyses arachidonyl phospholipids [2], the aligned region corresponds the the carboxy-terminal Ca2+-independent catalytic domain of the protein as discussed in [2].	Domain
A, B	PF00168	C2 domain (C2)	C2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PROTEIN (CYTOSOLIC PHOSPHOLIPASE A2)	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipase A2 activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity phospholipase activity lipase activity calcium-dependent phospholipase A2 activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipase A2 activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity phospholipase activity lipase activity calcium-dependent phospholipase A2 activity lysophospholipase activity phosphatidylcholine lysophospholipase activity calcium-dependent phospholipid binding phospholipid binding lipid binding amide binding ceramide binding sphingolipid binding anion binding ceramide 1-phosphate binding calcium-independent phospholipase A2 activity phosphatidylinositol phosphate binding phosphatidylinositol-4-phosphate binding phosphatidylinositol binding phosphatidylinositol-5-phosphate binding phosphatidylinositol-3-phosphate binding O-acyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	icosanoid metabolic process leukotriene metabolic process oxoacid metabolic process small molecule biosynthetic process leukotriene biosynthetic process carboxylic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process icosanoid biosynthetic process small molecule metabolic process metabolic process cellular process icosanoid metabolic process leukotriene metabolic process oxoacid metabolic process small molecule biosynthetic process leukotriene biosynthetic process carboxylic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process icosanoid biosynthetic process small molecule metabolic process metabolic process cellular process organic anion transport carboxylic acid transport secretion transport arachidonate transport lipid localization lipid transport establishment of localization organic acid transport localization arachidonate secretion monocarboxylic acid transport fatty acid transport icosanoid transport macromolecule localization icosanoid secretion long-chain fatty acid transport regulation of macrophage activation multicellular organismal process regulation of biological process positive regulation of macrophage activation regulation of cellular process regulation of leukocyte activation cell activation biological regulation positive regulation of biological process regulation of cell activation myeloid leukocyte activation leukocyte activation macrophage activation positive regulation of cell activation immune system process positive regulation of leukocyte activation positive regulation of multicellular organismal process regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process positive regulation of cellular process lipid catabolic process catabolic process phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process phosphatidylcholine catabolic process organophosphate metabolic process phosphate-containing compound metabolic process phosphatidylcholine metabolic process glycerolipid metabolic process glycerophospholipid catabolic process phosphorus metabolic process lipid metabolic process platelet activating factor metabolic process glycerol ether biosynthetic process glycerophospholipid biosynthetic process lipid biosynthetic process platelet activating factor biosynthetic process phospholipid biosynthetic process ether biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process ether lipid metabolic process ether lipid biosynthetic process prostaglandin metabolic process unsaturated fatty acid metabolic process prostanoid metabolic process prostaglandin biosynthetic process prostanoid biosynthetic process fatty acid metabolic process monocarboxylic acid biosynthetic process fatty acid biosynthetic process unsaturated fatty acid biosynthetic process monocarboxylic acid metabolic process positive regulation of T-helper 1 type immune response adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains response to stimulus immune response regulation of adaptive immune response T-helper 1 type immune response adaptive immune response regulation of T-helper 1 type immune response positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of response to stimulus positive regulation of immune response regulation of immune response positive regulation of adaptive immune response phosphatidylcholine acyl-chain remodeling carbohydrate metabolic process polyol metabolic process alcohol metabolic process glycerol metabolic process cellular localization establishment of localization in cell neutral lipid metabolic process neutral lipid biosynthetic process acylglycerol biosynthetic process monoacylglycerol biosynthetic process monoacylglycerol metabolic process acylglycerol metabolic process cellular response to stimulus cellular response to antibiotic cellular response to chemical stimulus response to chemical response to antibiotic phosphatidylglycerol metabolic process phosphatidylglycerol catabolic process long-chain fatty acid metabolic process arachidonate metabolic process olefinic compound metabolic process cell population proliferation regulation of cell population proliferation regulation of localization cell communication regulation of prostaglandin secretion prostaglandin secretion positive regulation of icosanoid secretion regulation of fatty acid transport regulation of secretion positive regulation of lipid transport lipid export from cell prostaglandin transport signaling regulation of lipid transport positive regulation of secretion by cell regulation of secretion by cell secretion by cell positive regulation of secretion signal release regulation of icosanoid secretion positive regulation of prostaglandin secretion regulation of transport export from cell cell-cell signaling positive regulation of lipid localization positive regulation of organic acid transport positive regulation of transport regulation of lipid localization regulation of organic acid transport positive regulation of fatty acid transport regulation of body fluid levels positive regulation of platelet activation response to stress coagulation regulation of biological quality response to wounding wound healing hemostasis blood coagulation regulation of platelet activation platelet activation	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane nuclear envelope nucleus endomembrane system cytosol organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane Golgi apparatus Golgi membrane bounding membrane of organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A, B	IPR002642	Lysophospholipase, catalytic domain	Domain
A, B	IPR041847	Cytosolic phospholipase A2, C2 domain	Domain
A, B	IPR000008	C2 domain	Domain
A, B	IPR035892	C2 domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P47712	duodenal ulcer amyotrophic lateral sclerosis adult acute respiratory distress syndrome breast carcinoma Liver Cirrhosis, Experimental occupational asthma Crohn disease inborn errors of metabolism breast cancer dermatitis inherited bleeding disorder, platelet-type glioblastoma interstitial cystitis malignant ependymoma adrenal cortex adenoma duodenal ulcer amyotrophic lateral sclerosis adult acute respiratory distress syndrome breast carcinoma Liver Cirrhosis, Experimental occupational asthma Crohn disease inborn errors of metabolism breast cancer dermatitis inherited bleeding disorder, platelet-type glioblastoma interstitial cystitis malignant ependymoma adrenal cortex adenoma atypical teratoid rhabdoid tumor bipolar disorder schizophrenia cystic fibrosis invasive ductal breast carcinoma lung adenocarcinoma malignant glioma adrenal cortex carcinoma malignant pancreatic neoplasm medulloblastoma autism ovarian cancer tuberculosis cryptogenic multifocal ulcerous stenosing enteritis exocrine pancreatic carcinoma large cell medulloblastoma malignant colon neoplasm malignant mesothelioma nasopharyngeal carcinoma schizoaffective disorder ductal breast carcinoma in situ

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	Alpha/Beta monotopic/peripheral	FabD/lysophospholipase-like	Lysophospholipase catalytic domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	phospholipase A2 (group group IVA) M-CSA #529	Cytosolic phospholipases A2 (cPLA2) are hydrolytic enzymes which catalyse the cleavage of the ester bond at the sn-2 position of phospholipid membranes to generate arachidonic acid, which is the precursor in the metabolic pathway of several lipid messengers, for instance, it is metabolised to prostaglandins by the cyclooxygenase pathway and to leukotrienes by the 5-lipooxygenase pathway. In addition, platelet-activating factor (PAF) can also be generated from a subset of the lysophospholipid produced.	Defined by 5 residues: GLY:A-197GLY:A-198ARG:A-200SER:A-228ASP:A-549 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.1.1.4 (PDB Primary Data) Search M-CSA Motif + EC 3.1.1.4 EC: 3.1.1.5 (UniProt) Search M-CSA Motif + EC 3.1.1.5

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.