1CER

DETERMINANTS OF ENZYME THERMOSTABILITY OBSERVED IN THE MOLECULAR STRUCTURE OF THERMUS AQUATICUS D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 2.5 ANGSTROMS RESOLUTION


Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth O]d1cero1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
A [auth O]d1cero2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
B [auth P]d1cerp1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
B [auth P]d1cerp2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
C [auth Q]d1cerq1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
C [auth Q]d1cerq2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
D [auth R]d1cerr1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
D [auth R]d1cerr2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
E [auth A]d1cera1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
E [auth A]d1cera2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
F [auth B]d1cerb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
F [auth B]d1cerb2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
G [auth C]d1cerc1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
G [auth C]d1cerc2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
H [auth D]d1cerd1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)
H [auth D]d1cerd2 Alpha and beta proteins (a+b) FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain GAPDH-like Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Thermus aquaticus ) [TaxId: 271 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth O]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
B [auth P]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
C [auth Q]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
D [auth R]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyGAPDH-like8056116 3000043 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth O]PF02800e1cerO1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
A [auth O]PF00044e1cerO2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
B [auth P]PF02800e1cerP1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
B [auth P]PF00044e1cerP2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
C [auth Q]PF02800e1cerQ1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
C [auth Q]PF00044e1cerQ2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
D [auth R]PF02800e1cerR1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
D [auth R]PF00044e1cerR2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
E [auth A]PF02800e1cerA1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
E [auth A]PF00044e1cerA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
F [auth B]PF02800e1cerB1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
F [auth B]PF00044e1cerB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
G [auth C]PF02800e1cerC1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
G [auth C]PF00044e1cerC2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
H [auth D]PF02800e1cerD1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
H [auth D]PF00044e1cerD2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth O]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A [auth O]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
B [auth P]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B [auth P]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
C [auth Q]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C [auth Q]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
D [auth R]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D [auth R]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
E [auth A]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E [auth A]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
F [auth B]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F [auth B]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
G [auth C]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G [auth C]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
H [auth D]3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H [auth D]3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE