1C04 | pdb_00001c04

IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d1c04a_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
D [auth B]	d1c04b_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
E [auth C]	d1c04c_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
F [auth D]	d1c04d_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Nucleic acid-binding proteins	8041953	3000135	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8041672	3000334	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Ribosomal protein L6	8036508	3000724	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Ribosomal protein L6	8036504	3000724	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Ribosomal protein L11, C-terminal domain	8039481	3001186	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8041752	3000433	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	Aminotran_3	e1c04A1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: Aminotran_3	ECOD (v294.1)
D [auth B]	Aminotran_3	e1c04B1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: Aminotran_3	ECOD (v294.1)
E [auth C]	Aminotran_3	e1c04C1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: Aminotran_3	ECOD (v294.1)
F [auth D]	Aminotran_3	e1c04D1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: Aminotran_3	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F]	23S RRNA FRAGMENT	-	-	-
C [auth A]	RIBOSOMAL PROTEIN L2	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
D [auth B]	RIBOSOMAL PROTEIN L6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
E [auth C]	RIBOSOMAL PROTEIN L11	RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
F [auth D]	RIBOSOMAL PROTEIN L14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
A [auth E]	23S RRNA FRAGMENT	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A]	IPR005880	Large ribosomal subunit protein uL2, bacteria/organella	Family
C [auth A]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
C [auth A]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
C [auth A]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
C [auth A]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
C [auth A]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
C [auth A]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
C [auth A]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
C [auth A]	IPR002171	Large ribosomal subunit protein uL2	Family
D [auth B]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
D [auth B]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
D [auth B]	IPR000702	Large ribosomal subunit protein uL6-like	Family
D [auth B]	IPR019906	Large ribosomal subunit protein uL6, bacteria	Family
D [auth B]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
E [auth C]	IPR020785	Large ribosomal subunit protein uL11, conserved site	Conserved Site
E [auth C]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
E [auth C]	IPR000911	Ribosomal protein uL11	Family
E [auth C]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
E [auth C]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
E [auth C]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
E [auth C]	IPR006519	Large ribosomal subunit protein uL11, bacteria	Family
F [auth D]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
F [auth D]	IPR000218	Large ribosomal subunit protein uL14	Family
F [auth D]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
F [auth D]	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family