Annotations: 12DU

In situ cryo-EM structure of the flagellar export gate in complex with the FliF RBM12 ring in Borrelia burgdorferi

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
VA [auth z], WA [auth 1], XA [auth 2], YA [auth 3]	PF01313	Bacterial export proteins, family 3 (Bac_export_3)	Bacterial export proteins, family 3	-	Family
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	PF01514	Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)	Secretory protein of YscJ/FliF RBM domain	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].	Domain
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	PF00460	Flagella basal body rod protein (Flg_bb_rod)	Flagella basal body rod protein	-	Family
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	PF06429	Flagellar basal body rod FlgEFG protein C-terminal (Flg_bbr_C)	Flagellar basal body rod FlgEFG protein C-terminal	This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which Pfam:PF00460 is often present at the extreme N terminus.	Domain
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	PF01313	Bacterial export proteins, family 3 (Bac_export_3)	Bacterial export proteins, family 3	-	Family
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	PF01514	Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)	Secretory protein of YscJ/FliF RBM domain	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].	Domain
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	PF00460	Flagella basal body rod protein (Flg_bb_rod)	Flagella basal body rod protein	-	Family
EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q]	PF01514	Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)	Secretory protein of YscJ/FliF RBM domain	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].	Domain
DA [auth K]	PF01514	Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)	Secretory protein of YscJ/FliF RBM domain	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].	Domain
DA [auth K]	PF01311	Bacterial export proteins, family 1 (Bac_export_1)	Bacterial export proteins, family 1	-	Family
AA [auth H], BA [auth I], CA [auth J], Y [auth F], Z [auth G]	PF01514	Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)	Secretory protein of YscJ/FliF RBM domain	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...	This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].	Domain
AA [auth H], BA [auth I], CA [auth J], Y [auth F], Z [auth G]	PF00813	FliP family (FliP)	FliP family	-	Family
X [auth A]	PF00460	Flagella basal body rod protein (Flg_bb_rod)	Flagella basal body rod protein	-	Family
X [auth A]	PF06429	Flagellar basal body rod FlgEFG protein C-terminal (Flg_bbr_C)	Flagellar basal body rod FlgEFG protein C-terminal	This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which Pfam:PF00460 is often present at the extreme N terminus.	Domain
X [auth A]	PF01312	FlhB HrpN YscU SpaS Family (Bac_export_2)	FlhB HrpN YscU SpaS Family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
VA [auth z], WA [auth 1], XA [auth 2], YA [auth 3]	Flagellar biosynthetic protein FliQ	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	Flagellar basal-body rod protein FlgC	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	Flagellar basal body rod protein FlgB	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q]	Flagellar hook-basal body complex protein FliE	cytoskeletal motor activity structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum
DA [auth K]	Flagellar biosynthetic protein FliR	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization protein targeting establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
AA [auth H], BA [auth I], CA [auth J], Y [auth F], Z [auth G]	Flagellar biosynthetic protein FliP	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
X [auth A]	Flagellar biosynthetic protein FlhB	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
VA [auth z], WA [auth 1], XA [auth 2], YA [auth 3]	IPR006305	Flagellar biosynthesis protein FliQ	Family
VA [auth z], WA [auth 1], XA [auth 2], YA [auth 3]	IPR002191	Bacterial export protein family 3	Family
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	IPR006299	Flagellar basal-body rod protein FlgC	Family
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], PA [auth W], QA [auth X], RA [auth Y], SA [auth Z], TA [auth a], UA [auth b]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
KA [auth R], LA [auth S], MA [auth T], NA [auth U], OA [auth V]	IPR006300	Flagellar basal-body rod protein FlgB	Family
EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q]	IPR001624	Flagellar hook-basal body complex protein FliE	Family
DA [auth K]	IPR002010	Type III secretion system inner membrane R protein	Family
DA [auth K]	IPR006303	Flagellar biosynthesis protein FliR	Family
AA [auth H], BA [auth I], CA [auth J], Y [auth F], Z [auth G]	IPR005838	Type III secretion system inner membrane P protein	Family
AA [auth H], BA [auth I], CA [auth J], Y [auth F], Z [auth G]	IPR005837	Flagellar transport protein FliP	Family
X [auth A]	IPR006136	Flagellar biosynthetic protein FlhB	Family
X [auth A]	IPR006135	Type III secretion system substrate exporter	Family
X [auth A]	IPR029025	Type III secretion system substrate exporter, C-terminal	Homologous Superfamily
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	IPR006182	Flagellar M-ring, N-terminal	Domain
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	IPR013556	Flagellar M-ring C-terminal	Domain
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], A [auth c], B [auth d], C [auth e], D [auth f], E [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth s], R [auth t], S [auth u], T [auth v], U [auth w], V [auth x], W [auth y]	IPR000067	Flagellar M-ring protein FliF	Family

12DU | pdb_000012du

In situ cryo-EM structure of the flagellar export gate in complex with the FliF RBM12 ring in Borrelia burgdorferi

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage