11UE | pdb_000011ue

Structure of PDGFRb Kinase Domain Bound to JNJ-PDGFRBi-1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Platelet-derived growth factor receptor beta	protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity platelet-derived growth factor receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity platelet-derived growth factor receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding platelet-derived growth factor beta-receptor activity platelet-derived growth factor binding growth factor binding platelet activating factor receptor activity G protein-coupled receptor activity phospholipase C activator activity phospholipase activator activity lipase activator activity kinase binding enzyme binding protein kinase binding vascular endothelial growth factor binding	multicellular organismal process angiogenesis multicellular organism development tube morphogenesis anatomical structure development cell migration cell motility blood vessel development system development developmental process heart development angiogenesis involved in coronary vascular morphogenesis blood vessel morphogenesis tube development multicellular organismal process angiogenesis multicellular organism development tube morphogenesis anatomical structure development cell migration cell motility blood vessel development system development developmental process heart development angiogenesis involved in coronary vascular morphogenesis blood vessel morphogenesis tube development animal organ development cell migration involved in heart development coronary vasculature development vasculature development circulatory system development anatomical structure morphogenesis anatomical structure formation involved in morphogenesis cell migration involved in coronary angiogenesis cellular process coronary vasculature morphogenesis cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus calcium-mediated signaling regulation of cell communication positive regulation of signaling cell migration involved in vasculogenesis cellular developmental process vasculogenesis cell differentiation metanephric glomerulus vasculature development connective tissue development metanephric glomerulus development renal system development kidney vasculature development renal system vasculature development metanephros development metanephric glomerular mesangial cell proliferation involved in metanephros development nephron development metanephric nephron development cell population proliferation cell proliferation involved in kidney development glomerular mesangium development tissue development glomerulus development metanephric glomerular mesangium development cell proliferation involved in metanephros development glomerular mesangial cell proliferation glomerulus vasculature development kidney development platelet-derived growth factor receptor-beta signaling pathway cell surface receptor signaling pathway platelet-derived growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway chemotaxis positive regulation of locomotion regulation of response to external stimulus response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to external stimulus taxis response to chemical regulation of locomotion locomotion cellular response to growth factor stimulus positive regulation of cell population proliferation positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway cellular response to endogenous stimulus VEGF-activated platelet-derived growth factor receptor signaling pathway response to endogenous stimulus vascular endothelial growth factor signaling pathway regulation of cell population proliferation cellular response to vascular endothelial growth factor stimulus response to growth factor glomerulus vasculature morphogenesis glomerular capillary formation metanephric glomerulus morphogenesis metanephric glomerulus vasculature morphogenesis glomerulus morphogenesis kidney vasculature morphogenesis metanephric glomerular capillary formation renal system vasculature morphogenesis regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration positive regulation of cell motility regulation of cell migration positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle cellular component organization regulation of mitotic cell cycle positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cell chemotaxis cellular response to chemical stimulus smooth muscle cell chemotaxis regulation of calcium ion import regulation of calcium ion transport regulation of localization positive regulation of calcium ion transport positive regulation of calcium ion import transport regulation of transport regulation of monoatomic ion transport establishment of localization calcium ion transport metal ion transport localization positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport calcium ion import monoatomic cation transport regulation of metal ion transport regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation sensory organ development retina vasculature development in camera-type eye eye development retina development in camera-type eye visual system development camera-type eye development sensory system development positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade aorta morphogenesis artery development aorta development artery morphogenesis regulation of metanephric mesenchymal cell migration positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway cell migration involved in kidney development cell migration involved in metanephros development positive regulation of metanephric mesenchymal cell migration metanephric mesenchymal cell migration regulation of cytoskeleton organization regulation of actin filament-based process actin cytoskeleton organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction reactive oxygen species metabolic process positive regulation of reactive oxygen species metabolic process positive regulation of metabolic process regulation of metabolic process regulation of reactive oxygen species metabolic process peptidyl-tyrosine modification peptidyl-amino acid modification peptidyl-tyrosine phosphorylation positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process regulation of MAP kinase activity regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of macromolecule metabolic process positive regulation of protein phosphorylation positive regulation of MAP kinase activity positive regulation of phosphorus metabolic process regulation of protein metabolic process regulation of molecular function positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of molecular function positive regulation of protein modification process positive regulation of protein kinase activity positive regulation of catalytic activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of phosphorylation cardiac muscle cell development cellular component assembly involved in morphogenesis cell development membraneless organelle assembly muscle cell differentiation striated muscle tissue development cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cardiac cell development muscle tissue development actomyosin structure organization organelle assembly cardiac muscle tissue development cardiac muscle cell differentiation cardiocyte differentiation myofibril assembly cardiac myofibril assembly striated muscle cell differentiation supramolecular fiber organization regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process positive regulation of biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process positive regulation of DNA biosynthetic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of DNA metabolic process biosynthetic process regulation of macromolecule biosynthetic process DNA biosynthetic process regulation of DNA metabolic process system process muscle adaptation smooth muscle adaptation muscle system process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system anchoring junction cell junction cellular anatomical structure membrane intracellular anatomical structure cytoplasm protein-containing complex signaling receptor complex membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system anchoring junction cell junction focal adhesion cell-substrate junction cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole lysosomal lumen intracellular organelle lumen organelle lumen lysosome cytoplasmic vesicle intracellular vesicle vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001824	Tyrosine-protein kinase, receptor class III, conserved site	Conserved Site
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR008266	Tyrosine-protein kinase, active site	Active Site
A	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR027288	Platelet-derived growth factor receptor beta	Family
A	IPR013151	Immunoglobulin-like beta-sandwich domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR050122	Receptor Tyrosine Kinase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P09619	skeletal overgrowth-craniofacial dysmorphism-hyperelastic skin-white matter lesions syndrome acroosteolysis-keloid-like lesions-premature aging syndrome myeloproliferative disorder, chronic, with eosinophilia infantile myofibromatosis basal ganglia calcification, idiopathic, 4 myofibromatosis, infantile, 1 chronic myelomonocytic leukemia Liver Cirrhosis, Experimental calcinosis basal ganglia disease cancer basal ganglia calcification, idiopathic, 1 bilateral striopallidodentate calcinosis gastric adenocarcinoma hepatocellular carcinoma skeletal overgrowth-craniofacial dysmorphism-hyperelastic skin-white matter lesions syndrome acroosteolysis-keloid-like lesions-premature aging syndrome myeloproliferative disorder, chronic, with eosinophilia infantile myofibromatosis basal ganglia calcification, idiopathic, 4 myofibromatosis, infantile, 1 chronic myelomonocytic leukemia Liver Cirrhosis, Experimental calcinosis basal ganglia disease cancer basal ganglia calcification, idiopathic, 1 bilateral striopallidodentate calcinosis gastric adenocarcinoma hepatocellular carcinoma interstitial cystitis invasive ductal breast carcinoma chronic eosinophilic leukemia pancreatic ductal adenocarcinoma dermatofibrosarcoma protuberans schizoaffective disorder gastric carcinoma systemic mastocytosis idiopathic hypereosinophilic syndrome ulcerative colitis acute myeloid leukemia juvenile myelomonocytic leukemia malignant mesothelioma bone marrow neoplasm myeloproliferative neoplasm colorectal cancer renal cell carcinoma schizophrenia gastrointestinal stromal tumor transitional cell carcinoma idiopathic pulmonary fibrosis intellectual disability interstitial lung disease malignant pancreatic neoplasm breast cancer myeloproliferative neoplasm, unclassifiable non-small cell lung carcinoma cystic fibrosis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.