6AXX

Structure of the T58A/I124A mutant of the HIV-1 capsid protein


ChainDomainClassArchitectureTopologyHomology
A1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein
A1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain A

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
APF00607gag gene protein p24 (core nucleocapsid protein) (Gag_p24)gag gene protein p24 (core nucleocapsid protein)- Family
APF00098Zinc knuckle (zf-CCHC)Zinc knuckleThe zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eu ...The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.
Domain
APF08705Gag protein p6 (Gag_p6)Gag protein p6HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors ...HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors [1]. The PTAP motif interacts with the cellular budding factor TSG101 [1]. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.
Domain
APF00540gag gene protein p17 (matrix protein) (Gag_p17)gag gene protein p17 (matrix protein)The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.Domain