6ZAY
Crystal structure of Atg16L in complex with GDP-bound Rab33B
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6zaya_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth B] | d6zayb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e6zayA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
C [auth B] | Ras | e6zayB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
B [auth C], D | PF08614 | Autophagy protein 16 (ATG16) (ATG16) | Autophagy protein 16 (ATG16) | - | Coiled-coil |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR041822 | Rab33A/B | Family |
A, C [auth B] | IPR005225 | Small GTP-binding domain | Domain |
A, C [auth B] | IPR001806 | Small GTPase | Family |
A, C [auth B] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
B [auth C], D | IPR045160 | Autophagy-related protein 16 | Family |
B [auth C], D | IPR019775 | WD40 repeat, conserved site | Conserved Site |
B [auth C], D | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
B [auth C], D | IPR013923 | Autophagy-related protein 16 domain | Domain |
B [auth C], D | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
B [auth C], D | IPR001680 | WD40 repeat | Repeat |
B [auth C], D | IPR020472 | G-protein beta WD-40 repeat | Repeat |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, C [auth B] | Q9H082 | :