6YAM

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K	SCOP2B Superfamily	50S Ribosomal protein L14-like	8053075	3000433	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Winged helix DNA-binding domain	8055712	3000034	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ribosomal S17 N-terminal domain-like	8052708	3002138	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Nucleic acid-binding proteins	8052707	3000135	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	L30e-like	8063980	3001739	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8052971	3001284	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Homeodomain-like	8052970	3000001	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Translational machinery components	8097824	3000571	SCOP2B (2022-06-29)
R [auth S]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8082683	3000100	SCOP2B (2022-06-29)
T [auth V]	SCOP2B Superfamily	Winged helix DNA-binding domain	8089322	3000034	SCOP2B (2022-06-29)
U [auth W]	SCOP2B Superfamily	Ribosomal protein S10	8097814	3001336	SCOP2B (2022-06-29)
W [auth Y]	SCOP2B Superfamily	Ribosomal protein S8	8079081	3000709	SCOP2B (2022-06-29)
Z [auth b]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8053150	3000068	SCOP2B (2022-06-29)
BA [auth d]	SCOP2B Superfamily	Nucleic acid-binding proteins	8095265	3000135	SCOP2B (2022-06-29)
CA [auth e]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8052584	3000068	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8097826	3001397	SCOP2B (2022-06-29)
EA [auth g]	SCOP2B Superfamily	WD40 repeat-like	8097816	3001694	SCOP2B (2022-06-29)
FA [auth n]	SCOP2B Superfamily	Winged helix DNA-binding domain	8090991	3000034	SCOP2B (2022-06-29)
GA [auth i]	SCOP2B Superfamily	Ribosomal protein S30e-like	8053455	3002190	SCOP2B (2022-06-29)
MA [auth U]	SCOP2 Family	Ribosomal protein S13	8101438	4000260	SCOP2 (2022-06-29)
MA [auth U]	SCOP2 Superfamily	S13-like H2TH domain	8101439	3000053	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Ribosomal S3Ae-like	8053208	3002166	SCOP2B (2022-06-29)
RA [auth v]	SCOP2B Superfamily	TPR-like	8093045	3001345	SCOP2B (2022-06-29)
RA [auth v]	SCOP2B Superfamily	Winged helix DNA-binding domain	8093052	3000034	SCOP2B (2022-06-29)
SA [auth w]	SCOP2B Superfamily	TPR-like	8091484	3001345	SCOP2B (2022-06-29)
SA [auth w]	SCOP2B Superfamily	Winged helix DNA-binding domain	8091488	3000034	SCOP2B (2022-06-29)
TA [auth q]	SCOP2B Superfamily	EIF3 subunit F C-terminal domain-like	8053239	3002167	SCOP2B (2022-06-29)
TA [auth q]	SCOP2B Superfamily	JAB1/MPN domain-like	8053240	3001105	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8052747	3000334	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleic acid-binding proteins	8052746	3000135	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Alpha-L RNA-binding motif	8052745	3001473	SCOP2B (2022-06-29)
H	SCOP2 Family	Ribosomal protein S7	8095702	4001112	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	Ribosomal protein S7	8095703	3000799	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	PF01251	e6yamJ1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: PF01251	ECOD (1.6)
K	PF01201	e6yamK1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF01201	ECOD (1.6)
L	PF00163,PF01479	e6yamL1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
M	PF03501	e6yamM1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03501	ECOD (1.6)
N	PF00366,PF16205	e6yamN1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366,PF16205	ECOD (1.6)
O	PF01248	e6yamO1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
P	PF08069	e6yamP2	A: alpha arrays	X: HTH	H: 40S ribosomal protein S13 N-terminal domain (From Topology)	T: 40S ribosomal protein S13 N-terminal domain	F: PF08069	ECOD (1.6)
P	PF00312	e6yamP1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
Q	PF00411	e6yamQ1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
R [auth S]	PF00380	e6yamS1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF00380	ECOD (1.6)
S [auth T]	PF00833	e6yamT1	A: alpha arrays	X: HTH	H: HTH	T: FF domain	F: PF00833	ECOD (1.6)
B [auth l]	PF05162	e6yaml1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: PF05162	ECOD (1.6)
T [auth V]	PF01090	e6yamV1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01090	ECOD (1.6)
U [auth W]	PF00338	e6yamW1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PF00338	ECOD (1.6)
V [auth X]	PF01249	e6yamX1	A: a+b two layers	X: 40S ribosomal protein rpS21 (S21e) (From Topology)	H: 40S ribosomal protein rpS21 (S21e) (From Topology)	T: 40S ribosomal protein rpS21 (S21e)	F: PF01249	ECOD (1.6)
W [auth Y]	PF00410	e6yamY2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
W [auth Y]	PF00410	e6yamY1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
X [auth Z]	PF00164	e6yamZ1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
Y [auth a]	PF01282	e6yama1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF01282	ECOD (1.6)
Z [auth b]	PF01283	e6yamb1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01283	ECOD (1.6)
AA [auth c]	PF01667	e6yamc1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01667	ECOD (1.6)
BA [auth d]	PF01200	e6yamd1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF01200	ECOD (1.6)
CA [auth e]	PF00253	e6yame1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF00253	ECOD (1.6)
C	PF00318	e6yamC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318	ECOD (1.6)
DA [auth f]	PF01599	e6yamf1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01599	ECOD (1.6)
EA [auth g]	PF00400	e6yamg1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
FA [auth n]	PF03297	e6yamn1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03297	ECOD (1.6)
GA [auth i]	PF04758	e6yami1	A: extended segments	X: 40S ribosomal protein S30 (S30e) (From Topology)	H: 40S ribosomal protein S30 (S30e) (From Topology)	T: 40S ribosomal protein S30 (S30e)	F: PF04758	ECOD (1.6)
IA [auth A]	PF00575	e6yamA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00575	ECOD (1.6)
IA [auth A]	PF07541	e6yamA2	A: alpha arrays	X: HhH/H2TH	H: eIF2alpha middle domain (From Topology)	T: eIF2alpha middle domain	F: PF07541	ECOD (1.6)
IA [auth A]	PF07541	e6yamA3	A: a+b two layers	X: Alpha-beta plaits	H: eIF-2-alpha, C-terminal domain (From Topology)	T: eIF-2-alpha, C-terminal domain	F: PF07541	ECOD (1.6)
JA [auth B]	PF03144	e6yamB4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF03144	ECOD (1.6)
JA [auth B]	PF09173	e6yamB3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: PF09173	ECOD (1.6)
JA [auth B]	PF00009	e6yamB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00009	ECOD (1.6)
JA [auth B]	F_UNCLASSIFIED	e6yamB2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: F_UNCLASSIFIED	ECOD (1.6)
KA [auth j]	PF01176	e6yamj1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF01176	ECOD (1.6)
LA [auth k]	PF04068,PF12837	e6yamk2	A: a+b two layers	X: 4Fe-4S ferredoxin (From Topology)	H: 4Fe-4S ferredoxin (From Topology)	T: 4Fe-4S ferredoxin	F: PF04068,PF12837	ECOD (1.6)
LA [auth k]	PF00005	e6yamk1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
MA [auth U]	PF00416	e6yamU1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: PF00416	ECOD (1.6)
D	PF01015	e6yamD1	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain (From Topology)	T: 40S ribosomal protein S3A N-terminal domain	F: PF01015	ECOD (1.6)
D	PF01015	e6yamD2	A: a+b two layers	X: T-fold	H: 40S ribosomal protein S3A C-terminal domain (From Topology)	T: 40S ribosomal protein S3A C-terminal domain	F: PF01015	ECOD (1.6)
NA [auth R]	PF00203	e6yamR1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: PF00203	ECOD (1.6)
PA [auth m]	PF05091	e6yamm1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: PF05091	ECOD (1.6)
RA [auth v]	PF01399	e6yamv2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
RA [auth v]	PF05470	e6yamv1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF05470	ECOD (1.6)
SA [auth w]	PF01399	e6yamw1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
SA [auth w]	PF09440	e6yamw3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF09440	ECOD (1.6)
SA [auth w]	PF21357	e6yamw2	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN7 C-terminal helix	F: PF21357	ECOD (1.6)
TA [auth q]	PF01398	e6yamq2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
TA [auth q]	PF13012	e6yamq1	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: PF13012	ECOD (1.6)
UA [auth r]	PF01398,PF19445	e6yamr1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398,PF19445	ECOD (1.6)
UA [auth r]	PF19445	e6yamr2	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: PF19445	ECOD (1.6)
VA [auth s]	PF10075	e6yams1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF10075	ECOD (1.6)
VA [auth s]	PF10075	e6yams2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF10075	ECOD (1.6)
E	PF03719	e6yamE2	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
E	PF00333	e6yamE3	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
E	PF00333	e6yamE1	A: extended segments	X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	T: N-terminal region in 40S ribosomal protein rpS2 (S5p)	F: PF00333	ECOD (1.6)
F	PF00189	e6yamF2	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: PF00189	ECOD (1.6)
F	PF07650	e6yamF1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: PF07650	ECOD (1.6)
G	PF00900	e6yamG2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00900	ECOD (1.6)
G	PF00467,PF16121	e6yamG1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF16121	ECOD (1.6)
G	PF00900,PF08071	e6yamG3	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00900,PF08071	ECOD (1.6)
H	PF00177	e6yamH1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
I	PF01092	e6yamI1	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: PF01092	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
K	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family
L	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
L	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
M	PF03501	Plectin/S10 domain (S10_plectin)	Plectin/S10 domain	This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.	Domain
N	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
N	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
O	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
P	PF08069	Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)	Ribosomal S13/S15 N-terminal domain	This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].	Domain
P	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
Q	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
R [auth S]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
S [auth T]	PF00833	Ribosomal S17 (Ribosomal_S17e)	Ribosomal S17	-	Family
B [auth l]	PF05162	Ribosomal protein L41 (Ribosomal_L41)	Ribosomal protein L41	-	Family
T [auth V]	PF01090	Ribosomal protein S19e (Ribosomal_S19e)	Ribosomal protein S19e	-	Family
U [auth W]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
V [auth X]	PF01249	Ribosomal protein S21e (Ribosomal_S21e)	Ribosomal protein S21e	-	Family
W [auth Y]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
X [auth Z]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family
Y [auth a]	PF01282	Ribosomal protein S24e (Ribosomal_S24e)	Ribosomal protein S24e	-	Family
Z [auth b]	PF01283	Ribosomal protein S26e (Ribosomal_S26e)	Ribosomal protein S26e	-	Family
AA [auth c]	PF01667	Ribosomal protein S27 (Ribosomal_S27e)	Ribosomal protein S27	-	Family
BA [auth d]	PF01200	Ribosomal protein S28e (Ribosomal_S28e)	Ribosomal protein S28e	-	Family
CA [auth e]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
C	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
C	PF16122	40S ribosomal protein SA C-terminus (40S_SA_C)	40S ribosomal protein SA C-terminus	-	Family
DA [auth f]	PF01599	Ribosomal protein S27a (Ribosomal_S27)	Ribosomal protein S27a	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].	Domain
EA [auth g]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
FA [auth n]	PF03297	S25 ribosomal protein (Ribosomal_S25)	S25 ribosomal protein	-	Family
GA [auth i]	PF04758	Ribosomal protein S30 (Ribosomal_S30)	Ribosomal protein S30	-	Family
IA [auth A]	PF07541	Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)	Eukaryotic translation initiation factor 2 alpha subunit	-	Family
IA [auth A]	PF00575	S1 RNA binding domain (S1)	S1 RNA binding domain	The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.	Domain
MA [auth U]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
D	PF01015	Ribosomal S3Ae family (Ribosomal_S3Ae)	Ribosomal S3Ae family	-	Family
NA [auth R]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19	-	Domain
QA [auth y]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
RA [auth v]	PF05470	Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	-	Repeat
RA [auth v]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
SA [auth w]	PF09440	eIF3 subunit 6 N terminal domain (eIF3_N)	eIF3 subunit 6 N terminal domain	This is the N terminal domain of subunit 6 translation initiation factor eIF3.	Domain
SA [auth w]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
SA [auth w]	PF21357	Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)	Eukaryotic translation initiation factor 3 subunit E, C-terminal	Eukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].	Domain
TA [auth q]	PF13012	Maintenance of mitochondrial structure and function (MitMem_reg)	Maintenance of mitochondrial structure and function	-	Family
TA [auth q]	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
VA [auth s]	PF10075	CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)	CSN8/PSMD8/EIF3K family	-	Family
XA [auth u]	PF18005	eIF3 subunit M, C-terminal helix (eIF3m_C_helix)	eIF3 subunit M, C-terminal helix	This is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].	Domain
XA [auth u]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
F	PF07650	KH domain (KH_2)	KH domain	-	Domain
F	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
G	PF00900	Ribosomal family S4e (Ribosomal_S4e)	Ribosomal family S4e	-	Family
G	PF16121	40S ribosomal protein S4 C-terminus (40S_S4_C)	40S ribosomal protein S4 C-terminus	-	Family
G	PF08071	RS4NT (NUC023) domain (RS4NT)	RS4NT (NUC023) domain	This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].	Domain
G	PF00467	KOW motif (KOW)	KOW motif	-	Family
H	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
I	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1]	initiator methionylated tRNA	-	-	-
J	ribosomal protein eS7	-	-	-
K	40S ribosomal protein eS8	-	-	-
L	40S ribosomal protein uS4	-	-	-
M	40S ribosomal protein eS10	-	-	-
N	40S ribosomal protein uS17	-	-	-
O	40S ribosomal protein eS12	-	-	-
P	ribosomal protein uS15	-	-	-
Q	40S ribosomal protein uS11	-	-	-
R [auth S]	40S ribosomal protein uS9	-	-	-
S [auth T]	40S ribosomal protein eS17	-	-	-
B [auth l]	60s ribosomal protein l41	-	-	-
T [auth V]	40S ribosomal protein eS19	-	-	-
U [auth W]	40S ribosomal protein uS10	-	-	-
V [auth X]	40S ribosomal protein eS21	-	-	-
W [auth Y]	40S ribosomal protein uS8	-	-	-
X [auth Z]	40S ribosomal protein uS12	-	-	-
Y [auth a]	40S ribosomal protein eS24	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	ribosomal subunit intracellular organelle protein-containing complex intracellular anatomical structure organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
Z [auth b]	40S ribosomal protein eS26	-	-	-
AA [auth c]	40S ribosomal protein eS27	-	-	-
BA [auth d]	40S ribosomal protein eS28	-	-	-
CA [auth e]	ribosomal protein uS14	-	-	-
C	40S ribosomal protein uS2	-	-	-
DA [auth f]	ribosomal protein eS31	-	-	-
EA [auth g]	ribosomal protein RACK1	-	-	-
FA [auth n]	ribosomal protein eS25	-	-	-
GA [auth i]	40S ribosomal protein eS30	-	-	-
HA [auth 2]	18S ribosomal RNA	-	-	-
IA [auth A]	eukaryotic translation initiation factor 2 subunit alpha	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding RNA binding	-	intracellular anatomical structure cytoplasmic ribonucleoprotein granule cellular anatomical entity ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule
JA [auth B]	eukaryotic translation initiation factor 2 subunit gamma	-	-	-
KA [auth j]	eukaryotic translation initiation factor 1A	-	-	-
LA [auth k]	ATP-binding cassette sub-family E member 1 (ABCE1)	-	-	-
MA [auth U]	40S ribosomal protein uS13	-	-	-
D	40S ribosomal protein eS1	structural molecule activity structural constituent of ribosome	developmental process cellular developmental process cell differentiation cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process developmental process cellular developmental process cell differentiation cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol
NA [auth R]	40S ribosomal protein uS19	-	-	-
OA [auth 3]	beta-globin mRNA	-	-	-
PA [auth m]	eukaryotic translation initiation factor 3 subunit d	-	-	-
QA [auth y]	Eukaryotic translation initiation factor 3 subunit A	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex
RA [auth v]	Eukaryotic translation initiation factor 3 subunit C	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding protein binding translation initiation factor binding RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
SA [auth w]	Eukaryotic translation initiation factor 3 subunit E	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding	regulation of cellular process cellular biosynthetic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of biological process positive regulation of translation positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process regulation of cellular process cellular biosynthetic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of biological process positive regulation of translation positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process catabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process mRNA catabolic process nuclear-transcribed mRNA catabolic process negative regulation of metabolic process mRNA metabolic process negative regulation of cellular biosynthetic process nucleic acid metabolic process organic cyclic compound catabolic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process organic substance catabolic process ribonucleoprotein complex biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly translational initiation cellular component organization or biogenesis protein-containing complex organization formation of cytoplasmic translation initiation complex cytoplasmic translation cytoplasmic translational initiation	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle synapse protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle synapse cell junction asymmetric synapse eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3e membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen PML body nuclear lumen
TA [auth q]	Eukaryotic translation initiation factor 3 subunit F	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity protein binding translation initiation factor binding identical protein binding metal-dependent deubiquitinase activity metallopeptidase activity	viral gene expression viral process viral translation IRES-dependent viral translational initiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly viral gene expression viral process viral translation IRES-dependent viral translational initiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity synapse cell junction eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
UA [auth r]	eukaryotic translation initiation factor 3 subunit h	-	-	-
VA [auth s]	Eukaryotic translation initiation factor 3 subunit K	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding RNA binding	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process regulation of translational initiation cellular metabolic process regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process regulation of translational initiation cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process ribonucleoprotein complex biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization formation of cytoplasmic translation initiation complex cytoplasmic translation cytoplasmic translational initiation	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
WA [auth t]	eukaryotic translation initiation factor 3 subunit l	-	-	-
E	40S ribosomal protein uS5	-	-	-
XA [auth u]	Eukaryotic translation initiation factor 3 subunit M	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
F	40S ribosomal protein uS3	-	-	-
G	40S ribosomal protein eS4	-	-	-
H	40S ribosomal protein uS7	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biological regulation regulation of biological quality regulation of translational fidelity cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process biological regulation regulation of biological quality regulation of translational fidelity cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	preribosome protein-containing complex ribonucleoprotein complex small-subunit processome synapse cell junction cellular anatomical entity cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle preribosome protein-containing complex ribonucleoprotein complex small-subunit processome synapse cell junction cellular anatomical entity cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
I	40S ribosomal protein eS6	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Y [auth a]	IPR001976	Small ribosomal subunit protein eS24	Family
Y [auth a]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
Y [auth a]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
IA [auth A]	IPR003029	S1 domain	Domain
IA [auth A]	IPR044126	IF2a, S1-like domain	Domain
IA [auth A]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
IA [auth A]	IPR024055	Translation initiation factor 2, alpha subunit, C-terminal	Homologous Superfamily
IA [auth A]	IPR024054	Translation initiation factor 2, alpha subunit, middle domain superfamily	Homologous Superfamily
IA [auth A]	IPR011488	Translation initiation factor 2, alpha subunit	Family
D	IPR001593	Small ribosomal subunit protein eS1	Family
D	IPR018281	Small ribosomal subunit protein eS1, conserved site	Conserved Site
D	IPR027500	Small ribosomal subunit protein eS1, eukaryotes	Family
QA [auth y]	IPR027512	Eukaryotic translation initiation factor 3 subunit A	Family
QA [auth y]	IPR000717	Proteasome component (PCI) domain	Domain
RA [auth v]	IPR027516	Eukaryotic translation initiation factor 3 subunit C	Family
RA [auth v]	IPR000717	Proteasome component (PCI) domain	Domain
RA [auth v]	IPR008905	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Domain
RA [auth v]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
RA [auth v]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
SA [auth w]	IPR016650	Eukaryotic translation initiation factor 3 subunit E	Family
SA [auth w]	IPR019010	Eukaryotic translation initiation factor 3 subunit E, N-terminal	Domain
SA [auth w]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
SA [auth w]	IPR000717	Proteasome component (PCI) domain	Domain
TA [auth q]	IPR027531	Eukaryotic translation initiation factor 3 subunit F	Family
TA [auth q]	IPR024969	EIF3F/CSN6-like, C-terminal	Domain
TA [auth q]	IPR037518	MPN domain	Domain
TA [auth q]	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
VA [auth s]	IPR016024	Armadillo-type fold	Homologous Superfamily
VA [auth s]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
VA [auth s]	IPR033464	CSN8/PSMD8/EIF3K	Domain
VA [auth s]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
VA [auth s]	IPR016020	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	Homologous Superfamily
VA [auth s]	IPR000717	Proteasome component (PCI) domain	Domain
VA [auth s]	IPR009374	Eukaryotic translation initiation factor 3 subunit K	Family
XA [auth u]	IPR045237	Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7	Family
XA [auth u]	IPR000717	Proteasome component (PCI) domain	Domain
XA [auth u]	IPR016024	Armadillo-type fold	Homologous Superfamily
XA [auth u]	IPR040750	eIF3 subunit M, C-terminal helix domain	Domain
XA [auth u]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
XA [auth u]	IPR027528	Eukaryotic translation initiation factor 3 subunit M	Family
H	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
H	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
H	IPR000235	Small ribosomal subunit protein uS7	Family
H	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
H	IPR005716	Ribosomal protein uS7, eukaryotic/archaeal	Family