6XIR

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyTranslational proteins8096942 3000811 SCOP2B (2022-06-29)
DSCOP2 FamilyRibosomal protein L5e and archael L18-like8096937 4006591 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyTranslational machinery components8096938 3000571 SCOP2 (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein L16p/L10e8101313 3000884 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRL5-like8096932 3001709 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
T [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
U [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
FA [auth b]SCOP2B SuperfamilyRibosomal protein L29e8096930 3002157 SCOP2B (2022-06-29)
GA [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
IA [auth e]SCOP2 FamilyRibosomal protein L32e8102035 4003517 SCOP2 (2022-06-29)
IA [auth e]SCOP2 SuperfamilyRibosomal protein L32e8102036 3000982 SCOP2 (2022-06-29)
JA [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
NA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8096924 3002206 SCOP2B (2022-06-29)
PA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
SA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
UA [auth q]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
VA [auth r]SCOP2B SuperfamilyRibosomal S3Ae-like8101309 3002166 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
ZA [auth v]SCOP2B SuperfamilyRibosomal protein S78065999 3000799 SCOP2B (2022-06-29)
AB [auth w]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
EB [auth AD]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
EB [auth AD]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
FB [auth AE]SCOP2B SuperfamilyTranslational machinery components8098660 3000571 SCOP2B (2022-06-29)
HB [auth AG]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
LB [auth AK]SCOP2 FamilyRibosomal protein S108096927 4001240 SCOP2 (2022-06-29)
LB [auth AK]SCOP2 SuperfamilyRibosomal protein S108096928 3001336 SCOP2 (2022-06-29)
MB [auth AL]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
NB [auth AM]SCOP2B SuperfamilyRibosomal protein S88101311 3000709 SCOP2B (2022-06-29)
QB [auth AP]SCOP2 FamilyRibosomal protein S25-like8096933 4007308 SCOP2 (2022-06-29)
QB [auth AP]SCOP2 SuperfamilyWinged helix DNA-binding domain8096934 3000034 SCOP2 (2022-06-29)
RB [auth AQ]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096936 3000068 SCOP2B (2022-06-29)
TB [auth AS]SCOP2 FamilyCold shock DNA-binding domain-like8096943 4001909 SCOP2 (2022-06-29)
TB [auth AS]SCOP2 SuperfamilyNucleic acid-binding proteins8096944 3000135 SCOP2 (2022-06-29)
UB [auth AT]SCOP2 FamilyRibosomal protein S14p/S29e8096925 4003647 SCOP2 (2022-06-29)
UB [auth AT]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096926 3000068 SCOP2 (2022-06-29)
EA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
JB [auth AI]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e6xirA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e6xirA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
BPF00297e6xirB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CPF00573e6xirC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e6xirC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
DPF14204,PF17144e6xirD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
EPF01159e6xirE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
GPF01248e6xirG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HPF00347e6xirH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
IPF00252e6xirI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
JPF00281,PF00673e6xirJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
K [auth L]PF01294e6xirL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
L [auth M]PF00467,PF01929e6xirM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
M [auth N]PF00827e6xirN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
N [auth O]PF00572e6xirO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
O [auth P]PF00237e6xirP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
P [auth Q]PF17135e6xirQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Q [auth R]PF01280e6xirR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Q [auth R]PF01280e6xirR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
R [auth S]F_UNCLASSIFIEDe6xirS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
R [auth S]PF01775e6xirS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
S [auth T]PF01157e6xirT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
T [auth U]PF01776e6xirU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
U [auth V]PF00238e6xirV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
V [auth W]PF01246e6xirW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
W [auth X]PF00276,PF03939e6xirX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
X [auth Y]PF16906e6xirY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
Y [auth Z]PF01777e6xirZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
Z [auth AA]PF03501e6xirAA1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
AA [auth AB]PF00366,PF16205e6xirAB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
FA [auth b]PF01779e6xirb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
GA [auth c]PF01248e6xirc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HA [auth d]PF01198e6xird1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
IA [auth e]PF01655e6xire1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
JA [auth f]PF01247e6xirf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
KA [auth g]PF01199e6xirg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
LA [auth h]PF00831e6xirh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
MA [auth i]PF01158e6xiri1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
NA [auth j]PF01907e6xirj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
OA [auth k]PF01781e6xirk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
PA [auth l]PF00832e6xirl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
QA [auth n]PF05162e6xirn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
RA [auth o]PF00935e6xiro1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
SA [auth p]PF01780e6xirp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
UA [auth q]PF00318e6xirq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
VA [auth r]PF01015e6xirr1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
VA [auth r]PF01015e6xirr2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
WA [auth s]PF03719e6xirs1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
WA [auth s]PF00333e6xirs2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
WA [auth s]PF00333e6xirs3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
XA [auth t]PF00189e6xirt2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
XA [auth t]PF07650e6xirt1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
YA [auth u]PF00900e6xiru2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
YA [auth u]PF00467,PF16121e6xiru1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
YA [auth u]PF00900,PF01479,PF08071e6xiru3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
ZA [auth v]PF00177e6xirv1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
AB [auth w]PF01092e6xirw1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
BB [auth x]PF01251e6xirx1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
CB [auth y]PF01201e6xiry1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
DB [auth z]PF00163,PF01479e6xirz1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
EB [auth AD]PF08069e6xirAD1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
EB [auth AD]PF00312e6xirAD2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
FB [auth AE]PF00411e6xirAE1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
GB [auth AF]PF00203e6xirAF1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
HB [auth AG]PF00380e6xirAG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
IB [auth AH]PF00833e6xirAH1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
KB [auth AJ]PF01090e6xirAJ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
LB [auth AK]PF00338e6xirAK1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
MB [auth AL]PF01249e6xirAL1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
NB [auth AM]PF00410e6xirAM1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
NB [auth AM]PF00410e6xirAM2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
OB [auth AN]PF00164e6xirAN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
QB [auth AP]PF03297e6xirAP1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
RB [auth AQ]PF01283e6xirAQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
SB [auth AR]PF01667e6xirAR1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
TB [auth AS]PF01200e6xirAS1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
UB [auth AT]PF00253e6xirAT1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
VB [auth AV]PF00400e6xirAV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
EA [auth a]PF00828e6xira1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
FPF00327,PF08079e6xirF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
JB [auth AI]PF00416e6xirAI1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
PB [auth AO]PF01282e6xirAO1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
L [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
L [auth M]PF00467KOW motif (KOW)KOW motif- Family
M [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
N [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
O [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
P [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Q [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
R [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
S [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
T [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
U [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
W [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
W [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
X [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Y [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
Z [auth AA]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
AA [auth AB]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
AA [auth AB]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
FA [auth b]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
GA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
HA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
IA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
JA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
KA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
LA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
MA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
NA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
OA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
RA [auth o]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
SA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
UA [auth q]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
VA [auth r]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
WA [auth s]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
WA [auth s]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
XA [auth t]PF07650KH domain (KH_2)KH domain- Domain
XA [auth t]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
YA [auth u]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
YA [auth u]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
YA [auth u]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
YA [auth u]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
YA [auth u]PF00467KOW motif (KOW)KOW motif- Family
ZA [auth v]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
AB [auth w]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
BB [auth x]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
CB [auth y]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
DB [auth z]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
DB [auth z]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
EB [auth AD]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
EB [auth AD]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
FB [auth AE]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
GB [auth AF]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
HB [auth AG]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IB [auth AH]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
KB [auth AJ]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
LB [auth AK]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
MB [auth AL]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
NB [auth AM]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OB [auth AN]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
QB [auth AP]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
RB [auth AQ]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
SB [auth AR]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
TB [auth AS]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
UB [auth AT]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
VB [auth AV]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
JB [auth AI]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PB [auth AO]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
RPL3 isoform 1
RPL4A isoform 1
RPL5 isoform 1
60S ribosomal protein L6-A
RPL8A isoform 1---
RPL9A isoform 1---
RPL10 isoform 1
RPL11B isoform 1
K [auth L]60S ribosomal protein L13-A
L [auth M]60S ribosomal protein L14-A
M [auth N]60S ribosomal protein L15-A
N [auth O]60S ribosomal protein L16-A
O [auth P]60S ribosomal protein L17-A
P [auth Q]60S ribosomal protein L18-A
Q [auth R]60S ribosomal protein L19-A
R [auth S]60S ribosomal protein L20-A
S [auth T]60S ribosomal protein L21-A
T [auth U]60S ribosomal protein L22-A
U [auth V]60S ribosomal protein L23-A
V [auth W]RPL24A isoform 1- - -
W [auth X]60S ribosomal protein L25
X [auth Y]60S ribosomal protein L26-A
Y [auth Z]60S ribosomal protein L27-A
Z [auth AA]40S ribosomal protein S10-A
AA [auth AB]40S ribosomal protein S11-A
BA [auth 1]35S ribosomal RNA---
CA [auth 3]5S ribosomal RNA---
DA [auth 4]5.8S ribosomal RNA---
FA [auth b]RPL29 isoform 1
GA [auth c]60S ribosomal protein L30
HA [auth d]60S ribosomal protein L31-A
IA [auth e]RPL32 isoform 1
JA [auth f]60S ribosomal protein L33-A
KA [auth g]60S ribosomal protein L34-A
LA [auth h]60S ribosomal protein L35-A
MA [auth i]60S ribosomal protein L36-A
NA [auth j]60S ribosomal protein L37-A
OA [auth k]RPL38 isoform 1
PA [auth l]60S ribosomal protein L39
QA [auth n]RPL41A isoform 1---
RA [auth o]60S ribosomal protein L42-A
SA [auth p]60S ribosomal protein L43-A
TA [auth 2]18S ribosomal RNA---
UA [auth q]40S ribosomal protein S0-A
VA [auth r]RPS1A isoform 1
WA [auth s]RPS2 isoform 1
XA [auth t]RPS3 isoform 1
YA [auth u]40S ribosomal protein S4-A
ZA [auth v]Rps5p
AB [auth w]40S ribosomal protein S6-A
BB [auth x]40S ribosomal protein S7-A
CB [auth y]RPS8A isoform 1
DB [auth z]40S ribosomal protein S9-A
EB [auth AD]40S ribosomal protein S13
FB [auth AE]40S ribosomal protein S14-B
GB [auth AF]RPS15 isoform 1
HB [auth AG]40S ribosomal protein S16-A
IB [auth AH]40S ribosomal protein S17-B
KB [auth AJ]40S ribosomal protein S19-A
LB [auth AK]RPS20 isoform 1
MB [auth AL]40S ribosomal protein S21-A
NB [auth AM]RPS22A isoform 1
OB [auth AN]40S ribosomal protein S23-A
QB [auth AP]RPS25A isoform 1- -
RB [auth AQ]RPS26B isoform 1
SB [auth AR]40S ribosomal protein S27-A
TB [auth AS]RPS28A isoform 1
UB [auth AT]RPS29A isoform 1
VB [auth AV]Guanine nucleotide-binding protein subunit beta-like protein
WB [auth AX],
XB [auth AZ]
Transfer RNA---
EA [auth a]60S ribosomal protein L28
60S ribosomal protein L7-A
JB [auth AI]40S ribosomal protein S18-A
PB [auth AO]40S ribosomal protein S24-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
K [auth L]IPR001380Large ribosomal subunit protein eL13Family
K [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
L [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth M]IPR039660Large ribosomal subunit protein eL14Family
L [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
L [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth M]IPR005824KOWDomain
M [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth N]IPR000439Large ribosomal subunit protein eL15Family
N [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth O]IPR005822Large ribosomal subunit protein uL13Family
N [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
O [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth P]IPR001063Large ribosomal subunit protein uL22Family
O [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
P [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
P [auth Q]IPR000039Large ribosomal subunit protein eL18Family
P [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth R]IPR039547Large ribosomal subunit protein eL19Family
Q [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Q [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
Q [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
R [auth S]IPR028877Large ribosomal subunit protein eL20Family
R [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
R [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth U]IPR002671Large ribosomal subunit protein eL22Family
T [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
U [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth V]IPR000218Large ribosomal subunit protein uL14Family
U [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
V [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
V [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
V [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
W [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
W [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
X [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth Y]IPR005824KOWDomain
X [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
X [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
Y [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
Y [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth Z]IPR001141Large ribosomal subunit protein eL27Family
Y [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Z [auth AA]IPR037447Small ribosomal subunit protein eS10Family
Z [auth AA]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR005326Plectin/eS10, N-terminalDomain
AA [auth AB]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
AA [auth AB]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
AA [auth AB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth AB]IPR000266Small ribosomal subunit protein uS17Family
AA [auth AB]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
FA [auth b]IPR002673Large ribosomal subunit protein eL29Family
GA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth d]IPR000054Large ribosomal subunit protein eL31Family
IA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth e]IPR001515Large ribosomal subunit protein eL32Family
IA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
JA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth f]IPR001780Large ribosomal subunit protein eL33Family
JA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
KA [auth g]IPR008195Large ribosomal subunit protein eL34Family
KA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
LA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
LA [auth h]IPR001854Large ribosomal subunit protein uL29Family
LA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
MA [auth i]IPR000509Large ribosomal subunit protein eL36Family
MA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
NA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth j]IPR001569Large ribosomal subunit protein eL37Family
NA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth k]IPR002675Large ribosomal subunit protein eL38Family
OA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
PA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
PA [auth l]IPR000077Large ribosomal subunit protein eL39Family
PA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
RA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth o]IPR000552Large ribosomal subunit protein eL42Family
SA [auth p]IPR002674Large ribosomal subunit protein eL43Family
SA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
UA [auth q]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
UA [auth q]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
UA [auth q]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
UA [auth q]IPR001865Small ribosomal subunit protein uS2Family
UA [auth q]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
VA [auth r]IPR001593Small ribosomal subunit protein eS1Family
VA [auth r]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
VA [auth r]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
WA [auth s]IPR000851Small ribosomal subunit protein uS5Family
WA [auth s]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
WA [auth s]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
WA [auth s]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
WA [auth s]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
WA [auth s]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
WA [auth s]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth t]IPR004044K Homology domain, type 2Domain
XA [auth t]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
XA [auth t]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
XA [auth t]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
XA [auth t]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
XA [auth t]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
XA [auth t]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
YA [auth u]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
YA [auth u]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
YA [auth u]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
YA [auth u]IPR002942RNA-binding S4 domainDomain
YA [auth u]IPR013845Small ribosomal subunit protein eS4, central regionDomain
YA [auth u]IPR000876Small ribosomal subunit protein eS4Family
YA [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth u]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
YA [auth u]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
YA [auth u]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
YA [auth u]IPR005824KOWDomain
ZA [auth v]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
ZA [auth v]IPR000235Small ribosomal subunit protein uS7Family
ZA [auth v]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
ZA [auth v]IPR023798Small ribosomal subunit protein uS7 domainDomain
ZA [auth v]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
AB [auth w]IPR014401Small ribosomal subunit protein eS6-likeFamily
AB [auth w]IPR001377Small ribosomal subunit protein eS6Family
AB [auth w]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
BB [auth x]IPR000554Small ribosomal subunit protein eS7Family
BB [auth x]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
CB [auth y]IPR001047Small ribosomal subunit protein eS8Family
CB [auth y]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
CB [auth y]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
CB [auth y]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
DB [auth z]IPR002942RNA-binding S4 domainDomain
DB [auth z]IPR022801Small ribosomal subunit protein uS4Family
DB [auth z]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
DB [auth z]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
DB [auth z]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
DB [auth z]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
EB [auth AD]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
EB [auth AD]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
EB [auth AD]IPR000589Small ribosomal subunit protein uS15Family
EB [auth AD]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
FB [auth AE]IPR001971Small ribosomal subunit protein uS11Family
FB [auth AE]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FB [auth AE]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GB [auth AF]IPR002222Small ribosomal subunit protein uS19Family
GB [auth AF]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
GB [auth AF]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
GB [auth AF]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
HB [auth AG]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
HB [auth AG]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HB [auth AG]IPR000754Small ribosomal subunit protein uS9Family
HB [auth AG]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IB [auth AH]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IB [auth AH]IPR001210Small ribosomal subunit protein eS17Family
IB [auth AH]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
KB [auth AJ]IPR001266Small ribosomal subunit protein eS19Family
KB [auth AJ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KB [auth AJ]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
KB [auth AJ]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LB [auth AK]IPR001848Small ribosomal subunit protein uS10Family
LB [auth AK]IPR027486Small ribosomal subunit protein uS10 domainDomain
LB [auth AK]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
LB [auth AK]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
LB [auth AK]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
MB [auth AL]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
MB [auth AL]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
MB [auth AL]IPR001931Small ribosomal subunit protein eS21Family
NB [auth AM]IPR000630Small ribosomal subunit protein uS8Family
NB [auth AM]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
NB [auth AM]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
OB [auth AN]IPR006032Small ribosomal subunit protein uS12Family
OB [auth AN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OB [auth AN]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
QB [auth AP]IPR004977Small ribosomal subunit protein eS25Family
QB [auth AP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
RB [auth AQ]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
RB [auth AQ]IPR000892Small ribosomal subunit protein eS26Family
RB [auth AQ]IPR047864Ribosomal protein eS26, conserved siteConserved Site
SB [auth AR]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
SB [auth AR]IPR000592Small ribosomal subunit protein eS27Family
SB [auth AR]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TB [auth AS]IPR028626Ribosomal protein eS28 conserved siteConserved Site
TB [auth AS]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TB [auth AS]IPR000289Small ribosomal subunit protein eS28Family
UB [auth AT]IPR001209Small ribosomal subunit protein uS14Family
UB [auth AT]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
UB [auth AT]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
UB [auth AT]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
VB [auth AV]IPR019775WD40 repeat, conserved siteConserved Site
VB [auth AV]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
VB [auth AV]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
VB [auth AV]IPR045223Small ribosomal subunit protein RACK1-likeFamily
VB [auth AV]IPR001680WD40 repeatRepeat
VB [auth AV]IPR020472G-protein beta WD-40 repeatRepeat
EA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth a]IPR030878Large ribosomal subunit protein uL15Family
EA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
JB [auth AI]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
JB [auth AI]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
JB [auth AI]IPR001892Small ribosomal subunit protein uS13Family
JB [auth AI]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
PB [auth AO]IPR001976Small ribosomal subunit protein eS24Family
PB [auth AO]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
PB [auth AO]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site