6VLN
Crystal structure of 4498 Fab in complex with circumsporozoite protein DND3 and anti-Kappa VHH domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | C1-set_1 | e6vlnH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth H] | V-set_12 | e6vlnH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
B [auth L] | C1-set_4 | e6vlnL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth L] | V-set | e6vlnL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth K] | V-set_8 | e6vlnK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H] | Fab 4498, anti-PfCSP | VH-CH1 | Homo sapiens (human) | IGHV3-33*01, IGHV3-33*04, IGHV3-33*08, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
B [auth L] | Fab 4498, anti-PfCSP | L-KAPPA | Homo sapiens (human) | IGKV3-11*01, IGKJ2*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV3 | - | circumsporozoite protein | anti kappa vhh domain | SAbDab (2024-09-13) |
B [auth L] | Light Chain | IGKV3 | Kappa | circumsporozoite protein | anti kappa vhh domain | SAbDab (2024-09-13) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth H] | 4498 Fab heavy chain | - | - | - |
B [auth L] | 4498 Fab light chain | - | - | - |
C [auth K] | anti Kappa VHH domain | - | - | - |
D [auth P] | Circumsporozoite protein | - |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
D [auth P] | IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat |
D [auth P] | IPR003067 | Plasmodium circumsporozoite protein | Family |
D [auth P] | IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily |
D [auth P] | IPR051860 | Plasmodium Circumsporozoite Invasion Protein | Family |