6U8N

Human IMPDH2 treated with ATP, IMP, and NAD+. Fully extended filament segment reconstruction.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
L [auth F]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
L [auth F]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
L [auth F]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	CBS-domain pair	8032324	3000123	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	Inosine monophosphate dehydrogenase (IMPDH)	8043277	3000263	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	PF00478	e6u8nA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
D [auth B]	PF00478	e6u8nB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
F [auth C]	PF00478	e6u8nC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
H [auth D]	PF00478	e6u8nD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
J [auth E]	PF00478	e6u8nE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
L [auth F]	PF00478	e6u8nF1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
N [auth G]	PF00478	e6u8nG1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)
P [auth H]	PF00478	e6u8nH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00478	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	PF00571	CBS domain (CBS)	CBS domain	CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...	CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].	Domain
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	PF00478	IMP dehydrogenase / GMP reductase domain (IMPDH)	IMP dehydrogenase / GMP reductase domain	This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains Pfam:PF00571 are inserted in the TIM barrel [2]. This family is a membe ...	This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains Pfam:PF00571 are inserted in the TIM barrel [2]. This family is a member of the common phosphate binding site TIM barrel family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	Inosine-5'-monophosphate dehydrogenase 2	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity IMP dehydrogenase activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding RNA binding nucleic acid binding DNA binding oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity IMP dehydrogenase activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding RNA binding nucleic acid binding DNA binding cation binding ion binding metal ion binding	rhythmic process circadian rhythm ribose phosphate metabolic process purine ribonucleoside monophosphate biosynthetic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleoside monophosphate biosynthetic process purine ribonucleoside monophosphate metabolic process purine nucleotide metabolic process organic substance metabolic process rhythmic process circadian rhythm ribose phosphate metabolic process purine ribonucleoside monophosphate biosynthetic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleoside monophosphate biosynthetic process purine ribonucleoside monophosphate metabolic process purine nucleotide metabolic process organic substance metabolic process ribonucleotide metabolic process ribonucleoside monophosphate metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine nucleoside monophosphate metabolic process phosphate-containing compound metabolic process organic substance biosynthetic process GMP metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside monophosphate metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process organonitrogen compound metabolic process cellular metabolic process GMP biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process nucleoside monophosphate biosynthetic process purine-containing compound metabolic process organic cyclic compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process organic cyclic compound biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process purine ribonucleotide metabolic process ribonucleoside monophosphate biosynthetic process purine nucleotide biosynthetic process cellular response to stimulus response to organic substance response to stimulus response to cytokine response to interleukin-4 cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular response to interleukin-4 cellular response to organic substance 'de novo' XMP biosynthetic process XMP metabolic process XMP biosynthetic process multicellular organismal process cell population proliferation immune system process mononuclear cell proliferation lymphocyte proliferation cell activation lymphocyte activation leukocyte proliferation leukocyte activation GTP metabolic process GTP biosynthetic process purine ribonucleoside triphosphate biosynthetic process purine nucleoside triphosphate biosynthetic process purine ribonucleoside triphosphate metabolic process ribonucleoside triphosphate metabolic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process ribonucleoside triphosphate biosynthetic process nucleoside triphosphate metabolic process	membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle vesicle lumen cytoplasmic vesicle lumen secretory granule lumen peroxisome microbody membrane bounding membrane of organelle peroxisomal membrane microbody organelle membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	IPR001093	IMP dehydrogenase/GMP reductase	Domain
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	IPR005990	Inosine-5'-monophosphate dehydrogenase	Family
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	IPR015875	IMP dehydrogenase / GMP reductase, conserved site	Conserved Site
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	IPR000644	CBS domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], A [auth I], B [auth A], C [auth J], D [auth B], E [auth K], F [auth C], G [auth L], H [auth D], I [auth M], J [auth E], K [auth N], L [auth F], M [auth O], N [auth G], O [auth P], P [auth H]	Pharos: P12268	pancreatic ductal adenocarcinoma Prevention of Cardiac Transplant Rejection psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor lung adenocarcinoma malignant colon neoplasm medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm cutaneous lupus erythematosus heart disease lung cancer malignant ependymoma myocardial infarction pancreatic ductal adenocarcinoma Prevention of Cardiac Transplant Rejection psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor lung adenocarcinoma malignant colon neoplasm medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm cutaneous lupus erythematosus heart disease lung cancer malignant ependymoma myocardial infarction ovarian cancer plasma cell myeloma astrocytic tumor diabetes mellitus large cell medulloblastoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm myopathy