6R86

Yeast Vms1-60S ribosomal subunit complex (post-state)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth M]SCOP2B SuperfamilyRL5-like8099392 3001709 SCOP2B (2022-06-29)
K [auth m]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
L [auth N]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
M [auth n]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
R [auth 5]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
B [auth X]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
T [auth s]SCOP2B SuperfamilyRibosomal protein L16p/L10e8079407 3000884 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
X [auth W]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
AA [auth x]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
C [auth i]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
EA [auth Z]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
FA [auth a]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
GA [auth b]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
JA [auth D]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
KA [auth d]SCOP2B SuperfamilyRibosomal protein L29e8053045 3002157 SCOP2B (2022-06-29)
MA [auth e]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
NA [auth F]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
PA [auth G]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
PA [auth G]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
RA [auth H]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)
SA [auth h]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
TA [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
UA [auth L]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8098448 3001911 SCOP2B (2022-06-29)
F [auth K]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
G [auth k]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
I [auth l]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth M]Ribosomal_L5_Ce6r86M1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
K [auth m]Ribosomal_L38ee6r86m1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
L [auth N]Ribosomal_L13ee6r86N1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
M [auth n]Ribosomal_L39e6r86n1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
N [auth O]Ribosomal_L14ee6r86O1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
O [auth o]Ribosomal_L40ee6r86o1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
P [auth p]Ribosomal_L15ee6r86p1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
QRibosomal_L13e6r86Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
R [auth 5]Ribosomal_L22e6r8651 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
SRibosomal_L18e6r86S1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
B [auth X]eIF-6e6r86X1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
T [auth s]Ribosomal_L16e6r86s1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
U [auth T]Ribosomal_L19e_Ne6r86T1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
U [auth T]Ribosomal_L19e_Ce6r86T2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
V [auth U]Ribosomal_L18Ae6r86U2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
W [auth V]Ribosomal_L21ee6r86V1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
X [auth W]Ribosomal_L22ee6r86W1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
Y [auth P]Ribosomal_L11e6r86P1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
Y [auth P]Ribosomal_L11_Ne6r86P2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
Z [auth r]Ribosomal_L10e6r86r1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
AA [auth x]Ribosomal_L14e6r86x1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
CA [auth Y]Ribosomal_L24ee6r86Y1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
C [auth i]Ribosomal_L34ee6r86i1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
EA [auth Z]Ribosomal_L23_3e6r86Z1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
FA [auth a]Ribosomal_L26e6r86a1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
GA [auth b]Ribosomal_L27ee6r86b1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
HA [auth C]Ribosomal_L44e6r86C1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
IA [auth c]Ribosomal_L18e6r86c1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
JA [auth D]Ribosomal_L37aee6r86D1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
KA [auth d]Ribosomal_L29ee6r86d1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
LA [auth E]Ribosomal_L2_1e6r86E1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
LA [auth E]Ribosomal_L2_C_2e6r86E2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
MA [auth e]Ribosomal_L7Aee6r86e1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
D [auth J]Ribosomal_L30_1e6r86J1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
NA [auth F]Ribosomal_L3e6r86F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
OA [auth f]Ribosomal_L31ee6r86f1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
PA [auth G]Ribosomal_L4e6r86G2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
PA [auth G]Ribos_L4_asso_Ce6r86G1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
QA [auth g]Ribosomal_L32ee6r86g1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
RA [auth H]Ribosomal_L5ee6r86H1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
SA [auth h]Ribosomal_L35Aee6r86h1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
TA [auth I]Ribosomal_L6ee6r86I1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
UA [auth L]Ribosomal_L1_2nd_1e6r86L2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
UA [auth L]Ribosomal_L1_1st_1e6r86L1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
E [auth j]Ribosomal_L29_2e6r86j1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
F [auth K]Ribosomal_L7Ae_1e6r86K1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
G [auth k]Ribosomal_L36ee6r86k1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
H [auth 7]Ribosomal_L6_2e6r8671 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
H [auth 7]Ribosomal_L6e6r8672 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
I [auth l]Ribosomal_L37ee6r86l1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF18826Bacteroidetes VLRF1 release factor (bVLRF1)Bacteroidetes VLRF1 release factorArchaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active ...Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome [1].
Domain
J [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
J [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth m]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
L [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
M [auth n]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
N [auth O]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
N [auth O]PF00467KOW motif (KOW)KOW motif- Family
O [auth o]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
P [auth p]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
R [auth 5]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
B [auth X]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
T [auth s]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
U [auth T]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
V [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
W [auth V]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
X [auth W]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Y [auth P]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
Y [auth P]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
Z [auth r]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AA [auth x]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
C [auth i]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
EA [auth Z]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
EA [auth Z]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
FA [auth a]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
FA [auth a]PF00467KOW motif (KOW)KOW motif- Family
GA [auth b]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
HA [auth C]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
IA [auth c]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
JA [auth D]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
KA [auth d]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
LA [auth E]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
LA [auth E]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
MA [auth e]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth J]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
D [auth J]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
NA [auth F]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
OA [auth f]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PA [auth G]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PA [auth G]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
QA [auth g]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
RA [auth H]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
RA [auth H]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
SA [auth h]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
TA [auth I]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
UA [auth L]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
E [auth j]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
F [auth K]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
G [auth k]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
H [auth 7]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth l]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1
J [auth M]60S ribosomal protein L11-B
K [auth m]60S ribosomal protein L38
L [auth N]60S ribosomal protein L13-A
M [auth n]60S ribosomal protein L39
N [auth O]60S ribosomal protein L14-A
O [auth o]Ubiquitin-60S ribosomal protein L40
P [auth p]60S ribosomal protein L15-A
60S ribosomal protein L16-A
R [auth 5]60S ribosomal protein L17-A
60S ribosomal protein L18-A
B [auth X]Eukaryotic translation initiation factor 6
T [auth s]60S ribosomal protein L10
U [auth T]60S ribosomal protein L19-A
V [auth U]60S ribosomal protein L20-A
W [auth V]60S ribosomal protein L21-A
X [auth W]60S ribosomal protein L22-A
Y [auth P]60S ribosomal protein L12-A
Z [auth r]60S acidic ribosomal protein P0
AA [auth x]60S ribosomal protein L23-A
BA [auth 3]5S ribosomal RNA---
CA [auth Y]60S ribosomal protein L24-A
C [auth i]60S ribosomal protein L34-A
DA [auth 4]5.8S ribosomal RNA---
EA [auth Z]60S ribosomal protein L25
FA [auth a]60S ribosomal protein L26-A
GA [auth b]60S ribosomal protein L27-A
HA [auth C]60S ribosomal protein L42-A
IA [auth c]60S ribosomal protein L28
JA [auth D]60S ribosomal protein L43-A
KA [auth d]60S ribosomal protein L29
LA [auth E]60S ribosomal protein L2-A
MA [auth e]60S ribosomal protein L30
D [auth J]60S ribosomal protein L7-A
NA [auth F]60S ribosomal protein L3
OA [auth f]60S ribosomal protein L31-A
PA [auth G]60S ribosomal protein L4-A
QA [auth g]60S ribosomal protein L32
RA [auth H]60S ribosomal protein L5
SA [auth h]60S ribosomal protein L33-A
TA [auth I]60S ribosomal protein L6-A
UA [auth L]60S ribosomal protein L1-A
VA [auth 1]25S ribosomal RNA---
E [auth j]60S ribosomal protein L35-A
F [auth K]60S ribosomal protein L8-A
G [auth k]60S ribosomal protein L36-A
H [auth 7]60S ribosomal protein L9-A
I [auth l]60S ribosomal protein L37-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR013087Zinc finger C2H2-typeDomain
A [auth R]IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
A [auth R]IPR041175VLRF1/Vms1Domain
A [auth R]IPR047139tRNA endonuclease ANKZF1/VMS1Family
J [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth M]IPR002132Large ribosomal subunit protein uL5Family
K [auth m]IPR002675Large ribosomal subunit protein eL38Family
K [auth m]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
L [auth N]IPR001380Large ribosomal subunit protein eL13Family
L [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
M [auth n]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
M [auth n]IPR000077Large ribosomal subunit protein eL39Family
M [auth n]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
N [auth O]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth O]IPR039660Large ribosomal subunit protein eL14Family
N [auth O]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
N [auth O]IPR002784Large ribosomal subunit protein eL14 domainDomain
N [auth O]IPR005824KOWDomain
O [auth o]IPR019954Ubiquitin conserved siteConserved Site
O [auth o]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
O [auth o]IPR000626Ubiquitin-like domainDomain
O [auth o]IPR019956Ubiquitin domainDomain
O [auth o]IPR001975Large ribosomal subunit protein eL40 domainDomain
O [auth o]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
P [auth p]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth p]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth p]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth p]IPR000439Large ribosomal subunit protein eL15Family
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
R [auth 5]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth 5]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth 5]IPR001063Large ribosomal subunit protein uL22Family
R [auth 5]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
IPR000039Large ribosomal subunit protein eL18Family
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
B [auth X]IPR002769Translation initiation factor IF6Family
T [auth s]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
T [auth s]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
T [auth s]IPR016180Large ribosomal subunit protein uL16 domainDomain
T [auth s]IPR047873Large ribosomal subunit protein uL16Family
T [auth s]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
U [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth T]IPR039547Large ribosomal subunit protein eL19Family
U [auth T]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
V [auth U]IPR028877Large ribosomal subunit protein eL20Family
V [auth U]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth U]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
W [auth V]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth V]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth V]IPR001147Large ribosomal subunit protein eL21Family
W [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth W]IPR002671Large ribosomal subunit protein eL22Family
X [auth W]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth P]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
Y [auth P]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Y [auth P]IPR000911Ribosomal protein uL11Family
Y [auth P]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Y [auth P]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Y [auth P]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
Z [auth r]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Z [auth r]IPR001790Large ribosomal subunit protein uL10Family
Z [auth r]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
Z [auth r]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Z [auth r]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
AA [auth x]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AA [auth x]IPR000218Large ribosomal subunit protein uL14Family
AA [auth x]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
CA [auth Y]IPR000988Large ribosomal subunit protein eL24-relatedFamily
CA [auth Y]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
CA [auth Y]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
C [auth i]IPR008195Large ribosomal subunit protein eL34Family
C [auth i]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
EA [auth Z]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
EA [auth Z]IPR013025Large ribosomal subunit protein uL23-likeFamily
EA [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth Z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth Z]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
FA [auth a]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth a]IPR005824KOWDomain
FA [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth a]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
FA [auth a]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
GA [auth b]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
GA [auth b]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
GA [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth b]IPR001141Large ribosomal subunit protein eL27Family
GA [auth b]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
HA [auth C]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth C]IPR000552Large ribosomal subunit protein eL42Family
IA [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IA [auth c]IPR030878Large ribosomal subunit protein uL15Family
IA [auth c]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IA [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth D]IPR002674Large ribosomal subunit protein eL43Family
JA [auth D]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth D]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KA [auth d]IPR002673Large ribosomal subunit protein eL29Family
LA [auth E]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
LA [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth E]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
LA [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth E]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
LA [auth E]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
LA [auth E]IPR002171Large ribosomal subunit protein uL2Family
MA [auth e]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
MA [auth e]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MA [auth e]IPR039109Large ribosomal subunit protein eL30-likeFamily
MA [auth e]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
D [auth J]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
D [auth J]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
D [auth J]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
D [auth J]IPR039699Large ribosomal subunit protein uL30Family
D [auth J]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
D [auth J]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
D [auth J]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
NA [auth F]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
NA [auth F]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
NA [auth F]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
NA [auth F]IPR000597Large ribosomal subunit protein uL3Family
NA [auth F]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
OA [auth f]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
OA [auth f]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
OA [auth f]IPR000054Large ribosomal subunit protein eL31Family
PA [auth G]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
PA [auth G]IPR002136Large ribosomal subunit protein uL4Family
PA [auth G]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
PA [auth G]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
PA [auth G]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
QA [auth g]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
QA [auth g]IPR001515Large ribosomal subunit protein eL32Family
QA [auth g]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
RA [auth H]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
RA [auth H]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
SA [auth h]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
SA [auth h]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
SA [auth h]IPR001780Large ribosomal subunit protein eL33Family
SA [auth h]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
TA [auth I]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
TA [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
TA [auth I]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
TA [auth I]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth I]IPR000915Large ribosomal subunit protein eL6Family
UA [auth L]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
UA [auth L]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
UA [auth L]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
UA [auth L]IPR002143Large ribosomal subunit protein uL1Family
UA [auth L]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
E [auth j]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
E [auth j]IPR001854Large ribosomal subunit protein uL29Family
E [auth j]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
E [auth j]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
F [auth K]IPR001921Large ribosomal subunit protein eL8Family
F [auth K]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
F [auth K]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
F [auth K]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
F [auth K]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
G [auth k]IPR000509Large ribosomal subunit protein eL36Family
G [auth k]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
H [auth 7]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth 7]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
H [auth 7]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth 7]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth l]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
I [auth l]IPR001569Large ribosomal subunit protein eL37Family
I [auth l]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
I [auth l]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily