6OZ9
Ebola virus glycoprotein in complex with EBOV-520 Fab
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Filo_glycop | e6oz9A1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
B | Ebola-like_HR1-HR2 | e6oz9B1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
C [auth L] | C1-set_4 | e6oz9L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e6oz9L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth H] | V-set_8 | e6oz9H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth H] | C1-set_1 | e6oz9H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth L] | Fab EBOV-520 | L-KAPPA | Homo sapiens (human) | IGKV3-20*01, IGKJ2*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
D [auth H] | Fab EBOV-520 | VH-CH1 | Homo sapiens (human) | IGHV4-59*01, IGHV4-59*08, IGHV4-4*08, IGHV4-59*13, IGHJ1*01, IGHJ3*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth L] | Light Chain | IGKV3 | Kappa | envelope glycoprotein | small secreted glycoprotein sgp | SAbDab (2024-09-13) |
D [auth H] | Heavy Chain | IGHV4 | - | envelope glycoprotein | small secreted glycoprotein sgp | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01611 | Filovirus glycoprotein (Filo_glycop) | Filovirus glycoprotein | - | Family | |
PF22307 | Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2) | Envelope glycoprotein GP2-like, HR1-HR2 | This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014625 | Filoviruses glycoprotein | Family | |
IPR002561 | Filoviruses glycoprotein, extracellular domain | Domain | |
IPR014625 | Filoviruses glycoprotein | Family | |
IPR002561 | Filoviruses glycoprotein, extracellular domain | Domain |