Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyE2 binding domain-like8052338 3000147 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052351 3000112 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052351 3000112 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052356 3000112 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySCCH domain-like8052355 3000139 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCC (catalytic cysteine) domain-like8052354 3000140 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052356 3000112 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFCCH domain-like8052344 3000138 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyE2 binding domain-like8052338 3000147 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052356 3000112 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052351 3000112 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFCCH domain-like8052344 3000138 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCC (catalytic cysteine) domain-like8052354 3000140 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySCCH domain-like8052355 3000139 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052356 3000112 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActivating enzymes of the ubiquitin-like proteins8052351 3000112 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyUbiquitin-like8093606 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like8093606 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CE1_FCCHe6o83C3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: E1_FCCHECOD (1.6)
CE1_UFDe6o83C4 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E1_UFDECOD (1.6)
CThiF_1e6o83C2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
CThiF_3e6o83C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_3ECOD (1.6)
AE1_FCCHe6o83A3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: E1_FCCHECOD (1.6)
AE1_UFDe6o83A4 A: a+b two layersX: beta-GraspH: E2-binding domain of E1 (From Topology)T: E2-binding domain of E1F: E1_UFDECOD (1.6)
AThiF_1e6o83A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_1ECOD (1.6)
AThiF_3e6o83A1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Activating enzymes of the ubiquitin-like proteinsF: ThiF_3ECOD (1.6)
Bubiquitin_1e6o83B1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Dubiquitin_1e6o83D1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00899ThiF family (ThiF)ThiF familyThis domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].Domain
A, C
PF09358Ubiquitin fold domain (E1_UFD)Ubiquitin fold domainThe ubiquitin fold domain is found at the C-terminus of ubiquitin-activating E1 family enzymes. This domain binds to E2 enzymes [1].Domain
A, C
PF10585Ubiquitin-activating enzyme, SCCH domain (UBA_E1_SCCH)Ubiquitin-activating enzyme, SCCH domainUbiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free A ...Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) [1]. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP [2,3,4]. The catalytic cysteine domain contains the E1 active site cysteine, and is divided in two half-domains, FCCH and SCCH, for 'first' and 'second' catalytic cysteine half-domain, respectively. This is the SCCH domain in which resides the catalytic cysteine [5].
Domain
A, C
PF16190Ubiquitin-activating enzyme E1 FCCH domain (E1_FCCH)Ubiquitin-activating enzyme E1 FCCH domainThis domain is found in the ubiquitin-activating E1 family enzymes [1].Domain
A, C
PF16191Ubiquitin-activating enzyme E1 four-helix bundle (E1_4HB)Ubiquitin-activating enzyme E1 four-helix bundleThis domain is found in the ubiquitin-activating E1 family enzymes [1].Domain
B, D
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Ubiquitin-activating enzyme E1 1
B, D
Ubiquitin-60S ribosomal protein L40