6NJG
Ubiquitin Variant in Complex with Ubiquitin Interacting Motif
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8104287 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | ubiquitin_1 | e6njgC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF02809 | Ubiquitin interaction motif (UIM) | Ubiquitin interaction motif | - | Motif |
B [auth C] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR002014 | VHS domain | Domain |
A [auth B] | IPR008942 | ENTH/VHS | Homologous Superfamily |
A [auth B] | IPR017455 | Zinc finger, FYVE-related | Domain |
A [auth B] | IPR000306 | FYVE zinc finger | Domain |
A [auth B] | IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
A [auth B] | IPR017073 | Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27 | Family |
A [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A [auth B] | IPR003903 | Ubiquitin interacting motif | Conserved Site |
A [auth B] | IPR049425 | Vacuolar protein sorting-associated protein 27, GAT-like domain | Domain |
B [auth C] | IPR019956 | Ubiquitin domain | Domain |
B [auth C] | IPR019954 | Ubiquitin conserved site | Conserved Site |
B [auth C] | IPR050158 | Ubiquitin and ubiquitin-like | Family |
B [auth C] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth C] | IPR000626 | Ubiquitin-like domain | Domain |