6JP6

The X-ray structure of yeast tRNA methyltransferase complex of Trm7 and Trm734 essential for 2'-O-methylation at the first position of anticodon in specific tRNAs

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	FtsJ	e6jp6B1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: FtsJ	ECOD (1.6)
D	FtsJ	e6jp6D1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: FtsJ	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
B, D	PF01728	FtsJ-like methyltransferase (FtsJ)	FtsJ-like methyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	tRNA (guanosine(34)-2'-O)-methyltransferase non-catalytic subunit TRM734	enzyme regulator activity molecular function regulator activity RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding	cellular biosynthetic process RNA metabolic process nucleobase-containing compound metabolic process organic substance metabolic process tRNA processing organic substance biosynthetic process RNA processing cellular metabolic process tRNA modification primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process macromolecule methylation cellular biosynthetic process RNA metabolic process nucleobase-containing compound metabolic process organic substance metabolic process tRNA processing organic substance biosynthetic process RNA processing cellular metabolic process tRNA modification primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process macromolecule methylation tRNA metabolic process organic cyclic compound metabolic process RNA modification biosynthetic process methylation macromolecule modification ncRNA metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA methylation tRNA methylation tRNA nucleoside ribose methylation wobble position ribose methylation cellular localization transport intracellular transport localization within membrane establishment of localization vesicle-mediated transport endocytic recycling endosomal transport vesicle-mediated transport to the plasma membrane localization establishment of localization in cell	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle vesicle
B, D	tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase	tRNA 2'-O-methyltransferase activity tRNA methyltransferase activity RNA methyltransferase activity O-methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity methyltransferase activity catalytic activity RNA 2'-O-methyltransferase activity tRNA (guanine(34)-2'-O)-methyltransferase activity tRNA (guanine) methyltransferase activity tRNA 2'-O-methyltransferase activity tRNA methyltransferase activity RNA methyltransferase activity O-methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity methyltransferase activity catalytic activity RNA 2'-O-methyltransferase activity tRNA (guanine(34)-2'-O)-methyltransferase activity tRNA (guanine) methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity cation binding binding ion binding S-adenosyl-L-methionine binding sulfur compound binding small molecule binding tRNA (cytidine) methyltransferase activity tRNA (cytidine(32)-2'-O)-methyltransferase activity	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process RNA metabolic process nucleobase-containing compound metabolic process tRNA processing RNA processing tRNA modification nucleic acid metabolic process macromolecule methylation tRNA metabolic process organic cyclic compound metabolic process RNA modification methylation macromolecule modification ncRNA metabolic process nucleic acid catabolic process RNA methylation tRNA methylation tRNA nucleoside ribose methylation wobble position ribose methylation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR001680	WD40 repeat	Repeat
A, C	IPR019775	WD40 repeat, conserved site	Conserved Site
A, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, D	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
B, D	IPR002877	Ribosomal RNA methyltransferase, FtsJ domain	Domain
B, D	IPR015507	Ribosomal RNA large subunit methyltransferase E	Family
B, D	IPR028590	tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase TRM7	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.