6JKY
Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6jkyb_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d6jkye_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6jkyc1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | automated matches | (Schistosoma margrebowiei ) [TaxId: 48269 ], | SCOPe (2.08) |
C | d6jkyc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Schistosoma margrebowiei ) [TaxId: 48269 ], | SCOPe (2.08) |
F | d6jkyf1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | automated matches | (Schistosoma margrebowiei ) [TaxId: 48269 ], | SCOPe (2.08) |
F | d6jkyf2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Schistosoma margrebowiei ) [TaxId: 48269 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Ubiquitin-related | 8093467 | 4000962 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Ubiquitin-like | 8093468 | 3000157 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Ubiquitin-like | 8093468 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF08537 | e6jkyA2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: EUF08537 | ECOD (1.6) |
A | EUF08662 | e6jkyA1 | A: mixed a+b and a/b | X: uncharacterized protein LPG2148 insertion domain (From Topology) | H: uncharacterized protein LPG2148 insertion domain (From Topology) | T: uncharacterized protein LPG2148 insertion domain | F: EUF08662 | ECOD (1.6) |
D | EUF08537 | e6jkyD1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: EUF08537 | ECOD (1.6) |
D | EUF08662 | e6jkyD2 | A: mixed a+b and a/b | X: uncharacterized protein LPG2148 insertion domain (From Topology) | H: uncharacterized protein LPG2148 insertion domain (From Topology) | T: uncharacterized protein LPG2148 insertion domain | F: EUF08662 | ECOD (1.6) |
B | UQ_con | e6jkyB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
E | UQ_con | e6jkyE1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
C | ubiquitin_1 | e6jkyC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
F | ubiquitin_1 | e6jkyF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22193 | MvcA insertion domain (MvcA_ins) | MvcA insertion domain | This entry represents the insertion domain of MvcA, the MavC paralogue A of bacterial effector MavC from Legionella pneumophila. MvcA catalyses the reverse reaction of MavC, removing Ub from Ube2N through hydrolysis which regulates MavC activity. Mvc ... | Domain | |
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
IPR019956 | Ubiquitin domain | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain |