6IW0
Crystal structure of 5A ScFv in complex with YFV-17D sE in postfusion state
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Flavi_glycop_C | e6iw0A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
A | Flavi_glycoprot | e6iw0A2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
B [auth H] | V-set_12 | e6iw0H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C [auth L] | V-set | e6iw0L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.98.10 | Mainly Beta | Sandwich | Tick-borne Encephalitis virus Glycoprotein | domain 1 | CATH (4.3.0) |
A | 3.30.67.10 | Alpha Beta | 2-Layer Sandwich | Viral Envelope Glycoprotein | domain 2 | CATH (4.3.0) |
A | 3.30.387.10 | Alpha Beta | 2-Layer Sandwich | Viral Envelope Glycoprotein | domain 3 | CATH (4.3.0) |
A | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H] | scFv 5A | VH | Homo sapiens (human) | IGHV4-59*11, IGHJ1*01 | V-DOMAIN VH | IG | SCFV-HEAVY-KAPPA | IMGT (202436-0) |
C [auth L] | scFv 5A | V-KAPPA | Homo sapiens (human) | IGKV1-5*03, IGKJ2*01 | V-DOMAIN V-KAPPA | IG | SCFV-HEAVY-KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV4 | - | envelope protein e | SAbDab (2024-09-13) |
C [auth L] | Light Chain | IGKV1 | Kappa | envelope protein e | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain | |