6I0Y

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel


ChainDomainClassArchitectureTopologyHomology
J2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25 Chain P
M2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M4.10.950.10 Few Secondary Structures Irregular Ribosomal protein L2 domain 3
S3.30.1550.10 Alpha Beta 2-Layer Sandwich Ribosomal protein L11, N-terminal domain Ribosomal protein L11/L12, N-terminal domain
S1.10.10.250 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ribosomal protein L11/L12, C-terminal domain
U2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14/L23
W3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase domain 3
X3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17 Chain: A,
Y3.30.420.100 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5
CA3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22 Chain A
C2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Ribosomal protein L33
DA3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domain
IA3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30 Chain: A,
JA2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
D1.10.287.3980 Mainly Alpha Orthogonal Bundle Helix Hairpins
G3.30.70.1730 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein L10, N-terminal RNA-binding domain

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
APF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
APF00467KOW motif (KOW)KOW motif- Family
JPF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
MPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
MPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
OPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
QPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
RPF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
RPF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
SPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
SPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
BPF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
TPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
UPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
VPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
WPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
XPF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
YPF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
ZPF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
AAPF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
BAPF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
CAPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
CPF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
DAPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
FAPF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
GAPF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
HAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
IAPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
JAPF18362Tri-helix bundle domain (THB)Tri-helix bundle domainThis domain can be found in the myosin-binding motif (m-domain) region present in myosin-binding protein C (MyBP-C). MyBP-C is a sarcomeric assembly protein necessary for the regulation of sarcomere structure and function [1]. The MyBP-C family of pr ...This domain can be found in the myosin-binding motif (m-domain) region present in myosin-binding protein C (MyBP-C). MyBP-C is a sarcomeric assembly protein necessary for the regulation of sarcomere structure and function [1]. The MyBP-C family of proteins consists mainly of modules with immunoglobulin (Ig) or fibronectin folds [2]. This domain exhibits a three-helix bundle fold and there is a known actin-binding motif, LK(R/K)XK positioned in the third helix (alpha3), similar to that found in villin and related proteins [1].
Domain
JAPF02818PPAK motif (PPAK)PPAK motif- Motif
JAPF00041Fibronectin type III domain (fn3)Fibronectin type III domain- Domain
JAPF07679Immunoglobulin I-set domain (I-set)Immunoglobulin I-set domain- Domain
JAPF09042Titin Z (Titin_Z)Titin ZThe titin Z domain, that recognises and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34. This interaction is ...The titin Z domain, that recognises and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34. This interaction is essential for sarcomere assembly [1].
Domain
JAPF00069Protein kinase domain (Pkinase)Protein kinase domain- Domain
DPF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
EPF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
FPF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
GPF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
HPF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
HPF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domain- Domain
IPF08053Tryptophanase operon leader peptide (Tna_leader)Tryptophanase operon leader peptide- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
h50S ribosomal protein L24
850S ribosomal protein L25
A23S ribosomal RNAnone none none
B5S ribosomal RNAnone none none
C50S ribosomal protein L2
D50S ribosomal protein L3
E50S ribosomal protein L4
F50S ribosomal protein L5
G50S ribosomal protein L6
H50S ribosomal protein L9
I50S ribosomal protein L11
050S ribosomal protein L32
J50S ribosomal protein L13
K50S ribosomal protein L14
L50S ribosomal protein L15
M50S ribosomal protein L16
N50S ribosomal protein L17
O50S ribosomal protein L18
P50S ribosomal protein L19
Q50S ribosomal protein L20
R50S ribosomal protein L21
S50S ribosomal protein L22
150S ribosomal protein L33
T50S ribosomal protein L23
VProline tRNAnone none none
W50S ribosomal protein L27
X50S ribosomal protein L28
Y50S ribosomal protein L29
Z50S ribosomal protein L30
zTitin
250S ribosomal protein L34
350S ribosomal protein L35
450S ribosomal protein L36
550S ribosomal protein L10
650S ribosomal protein L7/L12
7Tryptophanase operon leader peptide